BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2024.p (732 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096474|ref|YP_001101549.1| cyanophycin synthetase [Hermini... 904 0.0 gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Hermini... 551 e-158 >gi|134096474|ref|YP_001101549.1| cyanophycin synthetase [Herminiimonas arsenicoxydans] Length = 722 Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/718 (64%), Positives = 568/718 (79%), Gaps = 12/718 (1%) Query: 2 KNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIAGFPDRLTAWLPTLIEHRCS 61 K IE + L+L+GPNIWTYR LE W+DIG+LED PSNTI GF +RLTAWLP+L+EH C Sbjct: 4 KTIEIIDVLSLRGPNIWTYRPVLEAWVDIGDLEDSPSNTIPGFYERLTAWLPSLVEHHCG 63 Query: 62 YEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHET 121 GGF+ RL EGTWPGHI+EHV +ELQNLAG+ GFGKARET RGVYKVVVRARHE Sbjct: 64 VGVHGGFLMRLREGTWPGHIMEHVMIELQNLAGMQTGFGKARETGKRGVYKVVVRARHEE 123 Query: 122 VTRAALFAARDLVMAAIEDRPYDLDTTLRKLRRMVDRLCLGPSTACIVDAADERRIPTIR 181 V+RAALFAARDLVMAAIED+PYD+ +T+ LR +++ + LGPST CIV+AA +RRIP++R Sbjct: 124 VSRAALFAARDLVMAAIEDQPYDVKSTVNNLRNILESVALGPSTGCIVEAATDRRIPSMR 183 Query: 182 LSEGNLVQLGHGCKSRRIWTAESDQTGAIAEGISRDKDLTKSLLQTCGVPVPEGRLVDSP 241 L++GNLVQLG+G K RRIWTAE+DQT AIAE IS DK+LTK+LLQ+CGVPVPEGR+V+S Sbjct: 184 LNDGNLVQLGYGIKQRRIWTAETDQTSAIAETISSDKELTKTLLQSCGVPVPEGRIVNSA 243 Query: 242 EDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAFKVALEEGSGVLVERFIPGL 301 DAWEAA+ IGLPVV+KP D NHGRGV +LNT +IE AF +A +E S V+VERFI G Sbjct: 244 ADAWEAAESIGLPVVIKPLDGNHGRGVSTNLNTAADIEAAFLLAEQESSDVIVERFIRGN 303 Query: 302 EHRLLIVGGKLAAAARGEPIFIVGDGQSTVQDLLD-ELNRDPRRGLLEEHLLDPVLLDR- 359 EHRLLIVGGKL AAARGE IV DG+S++ +L++ +LN DPRRG E+ L+ +L+D Sbjct: 304 EHRLLIVGGKLVAAARGEEATIVADGKSSIFELINSQLNSDPRRGSSEDCPLNLILIDEA 363 Query: 360 -EP-AAALELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAVRIVGL 417 +P LEL RQ TTES+PAAG +IL+ RNGNV+ D+TD VHP+VAAAASLA RIVGL Sbjct: 364 DDPRVVLLELARQGYTTESIPAAGEKILVQRNGNVAFDVTDQVHPTVAAAASLAARIVGL 423 Query: 418 DIAGVDIVAEDISRPLQEQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEEN 477 DIAGVD+V EDIS+PL EQGGAIVEVNAGPGLLMHLKP+DG RPVG AI+D+LF +E+ Sbjct: 424 DIAGVDLVVEDISKPLTEQGGAIVEVNAGPGLLMHLKPADGPARPVGRAIVDHLFAADES 483 Query: 478 GRIPVVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRATWDAAHR 537 GRIP+VGVTG+HG T ++RLIA ++HL G +VGLAC +GL+ +R + + WDA + Sbjct: 484 GRIPIVGVTGSHGTTVVSRLIAWLLHLQGAYVGLACKDGLFLRQRPVLKKASDNWDAGRQ 543 Query: 538 VLLNRAVEAAVFENGSAAILSEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKR 597 VL+NR VEAAVFENGS AILSEGLAYD C VGVV NIDP D+LPEFYI++AEQ+ ++V R Sbjct: 544 VLMNRMVEAAVFENGSKAILSEGLAYDWCQVGVVTNIDPADTLPEFYIDDAEQM-SRVLR 602 Query: 598 TQVDLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELLASHLKDGGRAVFLRDG 657 TQ+D+VL G AVLNA D VADMA LCDG VIFF+ P ++++HL G RAVF+RDG Sbjct: 603 TQIDVVLSTGVAVLNAADERVADMASLCDGSVIFFAASPTEAVMSAHLASGQRAVFMRDG 662 Query: 658 DLIQAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGIGPEVIRAGIELF 715 +++ A G+ + + +A P A +EN LAAV AAWALGIGPE+IRAGIE F Sbjct: 663 NIVLATGKEEILID--NATP-----HAALTMENSLAAVAAAWALGIGPELIRAGIETF 713 >gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Herminiimonas arsenicoxydans] Length = 856 Score = 551 bits (1421), Expect = e-158, Method: Compositional matrix adjust. Identities = 317/727 (43%), Positives = 437/727 (60%), Gaps = 19/727 (2%) Query: 3 NIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIAGFPDRLTAWLPTLIEHRCSY 62 ++E R L+GPN+W+ +++E + E E + I GF DRL A P I+ S Sbjct: 2 SMEISRVRALRGPNLWSRHTSIEAIVSCNESEQDIA-AIPGFEDRLRARFPE-IKFIESA 59 Query: 63 EERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHETV 122 + F +LE L LQ AG P F + T + Y+VVV E V Sbjct: 60 RPKKAFSM--------ADVLEFAALGLQAQAGCPVTFSRTIATVEKDTYQVVVEYTEEAV 111 Query: 123 TRAALFAARDLVMAAIEDRPYDLDTTLRKLRRMVDRLCLGPSTACIVDAADERRIPTIRL 182 R A A++L AA+ED P+DL T L LR + + + LGPST IVDAA R IP RL Sbjct: 112 GRLAFELAQELCRAAVEDTPFDLATALASLRELDEDIRLGPSTGAIVDAAVLRGIPYRRL 171 Query: 183 SEGNLVQLGHGCKSRRIWTAESDQTGAIAEGISRDKDLTKSLLQTCGVPVPEGRLVDSPE 242 +EG++VQ G G K RI AE+ T AIAE I++DK++TK LL GVPVP+GR V + + Sbjct: 172 TEGSMVQFGWGSKQLRIQAAETSFTSAIAESIAQDKEMTKLLLSAAGVPVPDGRSVTTAD 231 Query: 243 DAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAFKVALEEGSGVLVERFIPGLE 302 DAW AA +IG VV+KP D N G+GV ++L TREEIE F A V++ER+I G + Sbjct: 232 DAWLAATEIGAAVVIKPRDGNQGKGVSVNLKTREEIEVGFAAAQVICDDVVIERYISGQD 291 Query: 303 HRLLIVGGKLAAAARGEPIFIVGDGQSTVQDLLDELNRDPRRGLLEEHLLDPVLLDREPA 362 +R L+VG +L AAAR P ++GDG T+Q L+D++N DP RG L + +D+ Sbjct: 292 YRFLVVGKQLIAAARRTPPEVIGDGVQTIQQLIDQVNLDPLRGDGHASPLTKIKVDKTTL 351 Query: 363 AALELQRQNLTTESVPAAGRRILLLRNGNVS-----SDITDLVHPSVAAAASLAVRIVGL 417 A LE +Q+ T ES+PA G ++L N N+S +D+TD VHP +AA A +++GL Sbjct: 352 ATLE--KQSHTLESIPAKGVPVVLRNNANLSTGGIATDVTDDVHPELAARVVEAAQMIGL 409 Query: 418 DIAGVDIVAEDISRPLQEQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEEN 477 DIAGVD+V E++ L+EQGG IVEVNA PGL MH+KPS GK RPVGEAI+ +F ++ Sbjct: 410 DIAGVDLVCENVHNTLEEQGGGIVEVNAAPGLRMHIKPSFGKGRPVGEAIVSTMFAEGDD 469 Query: 478 GRIPVVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRATWDAAHR 537 GRIPVV V GT+GKTT RLIA I+ + VG+ +G+Y ++I+ G+ + +A Sbjct: 470 GRIPVVAVAGTNGKTTTVRLIAHILQANKHRVGMTTTDGVYIENQRIDTGDCSGPRSARN 529 Query: 538 VLLNRAVEAAVFENGSAAILSEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKR 597 VL++ V+AAVFE +L EGL +DRC V VV NI D L +I E +A VKR Sbjct: 530 VLMHPDVDAAVFETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAV-VKR 588 Query: 598 TQVDLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELLASHLKDGGRAVFLRDG 657 V V P+G AVLNA DP+VA+MA C G V FF+ D +LA+H G R VFL Sbjct: 589 VIVQNVAPNGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHRAKGHRVVFLDGT 648 Query: 658 DLIQAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGIGPEVIRAGIELFGT 717 ++ +EG + +++ D I +T NG + +Q+EN +AA+GAAW+L + +++ G+ F Sbjct: 649 SIVASEGAFEHRIALAD-IAITHNGLIGFQIENAMAAIGAAWSLNLSWDIVLNGLRTFEN 707 Query: 718 ERAEEQG 724 A G Sbjct: 708 SAATTPG 714 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,387,536 Number of extensions: 59135 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 2 Length of query: 732 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 643 Effective length of database: 707,092 Effective search space: 454660156 Effective search space used: 454660156 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)