BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2023.p (857 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Hermini... 1260 0.0 gi|134096474|ref|YP_001101549.1| cyanophycin synthetase [Hermini... 477 e-135 >gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Herminiimonas arsenicoxydans] Length = 856 Score = 1260 bits (3261), Expect = 0.0, Method: Compositional matrix adjust. Identities = 617/853 (72%), Positives = 720/853 (84%) Query: 1 MDVSRIRALRGPNLWSRHTAVEAIVSCPENERVIADMPGFELRLRARFPQIGFLEPDGGK 60 M++SR+RALRGPNLWSRHT++EAIVSC E+E+ IA +PGFE RLRARFP+I F+E K Sbjct: 3 MEISRVRALRGPNLWSRHTSIEAIVSCNESEQDIAAIPGFEDRLRARFPEIKFIESARPK 62 Query: 61 QVVSMAHALAAAALALQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVGRLAFDLALEL 120 + SMA L AAL LQ+QAGCPVTFSRT++TVE YQVVVEY+EE VGRLAF+LA EL Sbjct: 63 KAFSMADVLEFAALGLQAQAGCPVTFSRTIATVEKDTYQVVVEYTEEAVGRLAFELAQEL 122 Query: 121 VRAAQADTPFDLTGALARIRELDEDVRLGPSTASIVNAALKRGIPYRRLTQGSMVQFGWG 180 RAA DTPFDL ALA +RELDED+RLGPST +IV+AA+ RGIPYRRLT+GSMVQFGWG Sbjct: 123 CRAAVEDTPFDLATALASLRELDEDIRLGPSTGAIVDAAVLRGIPYRRLTEGSMVQFGWG 182 Query: 181 SRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGS 240 S+Q RIQAAETS TSAIAESIAQDK++TK+LL AAGVPVP+GR V T +DA AA EIG+ Sbjct: 183 SKQLRIQAAETSFTSAIAESIAQDKEMTKLLLSAAGVPVPDGRSVTTADDAWLAATEIGA 242 Query: 241 AVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLV 300 AVVIKP DGNQGKGV+VN+ T E+I F A +I D+V++ERY+ G D+R LV+GK L+ Sbjct: 243 AVVIKPRDGNQGKGVSVNLKTREEIEVGFAAAQVICDDVVIERYISGQDYRFLVVGKQLI 302 Query: 301 AAARRDPPQVIGDGVHTIRQLIDQVNADPLRGDGHATSLTKIRLDDIALSVLSGQNLDPE 360 AAARR PP+VIGDGV TI+QLIDQVN DPLRGDGHA+ LTKI++D L+ L Q+ E Sbjct: 303 AAARRTPPEVIGDGVQTIQQLIDQVNLDPLRGDGHASPLTKIKVDKTTLATLEKQSHTLE 362 Query: 361 AIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVH 420 +IPA+GV VVLRNNANLSTGG ATDVTDDVHP++AAR + AAQM+GLDI GVD+VC +VH Sbjct: 363 SIPAKGVPVVLRNNANLSTGGIATDVTDDVHPELAARVVEAAQMIGLDIAGVDLVCENVH 422 Query: 421 MSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIISTMYDDGDDGRIPVVAVAGTNG 480 +LEEQGGGIVEVNAAPGLRMH+ PS+GK R VGEAI+STM+ +GDDGRIPVVAVAGTNG Sbjct: 423 NTLEEQGGGIVEVNAAPGLRMHIKPSFGKGRPVGEAIVSTMFAEGDDGRIPVVAVAGTNG 482 Query: 481 KTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLE 540 KTTTVRLI H+L RVGMT TDGVYI+ QR DTGDCSGPRSARNVL HPDVDAAV E Sbjct: 483 KTTTVRLIAHILQANKHRVGMTTTDGVYIENQRIDTGDCSGPRSARNVLMHPDVDAAVFE 542 Query: 541 TARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRVIVENVASTGTAVL 600 TARGGVLREGLGFDRC VAVVTNIG+GDHLGL++ISTVEDLAVVKRVIV+NVA GTAVL Sbjct: 543 TARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRVIVQNVAPNGTAVL 602 Query: 601 NAADPMVAKMATSCPGSVTFFALDPTHPIMATHRAQGHRIVYRDGDAIVAAQGTFEKRLK 660 NAADPMVA MA SCPGSVTFFA D H ++ATHRA+GHR+V+ DG +IVA++G FE R+ Sbjct: 603 NAADPMVANMAASCPGSVTFFAKDGNHAVLATHRAKGHRVVFLDGTSIVASEGAFEHRIA 662 Query: 661 LSGIPLTRSGAIGFQVENVMASVGAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYK 720 L+ I +T +G IGFQ+EN MA++GAAW+LNL W+ + L +F + + T PGRFNLF + Sbjct: 663 LADIAITHNGLIGFQIENAMAAIGAAWSLNLSWDIVLNGLRTFENSAATTPGRFNLFTHH 722 Query: 721 GATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGAGDRRDADITRQTELLGDAFDEVV 780 GAT+IADYGHNPDAI+AL AV++MPAKRR VVISGAGDRRD D+ RQTE+LGDAFD+V+ Sbjct: 723 GATVIADYGHNPDAIEALTHAVEAMPAKRRMVVISGAGDRRDDDLRRQTEILGDAFDDVI 782 Query: 781 LYQDQCQRGREDGEVIALLRQGLGKATRTADVKEINGEFLAIDTALANLQPGDLCLILID 840 LY+DQCQRGR DGEV+ALLRQGL KA R +KEI+GEFLAIDTALA+LQ GDLCLIL+D Sbjct: 783 LYEDQCQRGRADGEVLALLRQGLTKAKRAKSIKEIHGEFLAIDTALASLQAGDLCLILVD 842 Query: 841 QVEEALVHIDQRV 853 QVEEAL HI RV Sbjct: 843 QVEEALAHIASRV 855 >gi|134096474|ref|YP_001101549.1| cyanophycin synthetase [Herminiimonas arsenicoxydans] Length = 722 Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust. Identities = 289/669 (43%), Positives = 392/669 (58%), Gaps = 26/669 (3%) Query: 1 MDVSRIRALRGPNLWSRHTAVEAIVSCPENERVIAD-MPGFELRLRARFPQI-------- 51 +++ + +LRGPN+W+ +EA V + E ++ +PGF RL A P + Sbjct: 6 IEIIDVLSLRGPNIWTYRPVLEAWVDIGDLEDSPSNTIPGFYERLTAWLPSLVEHHCGVG 65 Query: 52 ---GFLEPDGGKQVVSMAHALAAAALALQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEE 108 GFL ++ H + + LQ+ AG F + T + G+Y+VVV EE Sbjct: 66 VHGGFLMRL--REGTWPGHIMEHVMIELQNLAGMQTGFGKARETGKRGVYKVVVRARHEE 123 Query: 109 VGRLAFDLALELVRAAQADTPFDLTGALARIRELDEDVRLGPSTASIVNAALKRGIPYRR 168 V R A A +LV AA D P+D+ + +R + E V LGPST IV AA R IP R Sbjct: 124 VSRAALFAARDLVMAAIEDQPYDVKSTVNNLRNILESVALGPSTGCIVEAATDRRIPSMR 183 Query: 169 LTQGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETV 228 L G++VQ G+G +Q+RI AET TSAIAE+I+ DK+LTK LL + GVPVP GR+V + Sbjct: 184 LNDGNLVQLGYGIKQRRIWTAETDQTSAIAETISSDKELTKTLLQSCGVPVPEGRIVNSA 243 Query: 229 EDALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGH 288 DA +AAE IG VVIKPLDGN G+GV+ N++T I AF A S +VIVER++ G+ Sbjct: 244 ADAWEAAESIGLPVVIKPLDGNHGRGVSTNLNTAADIEAAFLLAEQESSDVIVERFIRGN 303 Query: 289 DFRLLVIGKTLVAAARRDPPQVIGDGVHTIRQLID-QVNADPLRGDGHATSLTKIRLDD- 346 + RLL++G LVAAAR + ++ DG +I +LI+ Q+N+DP RG L I +D+ Sbjct: 304 EHRLLIVGGKLVAAARGEEATIVADGKSSIFELINSQLNSDPRRGSSEDCPLNLILIDEA 363 Query: 347 ----IALSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAA 402 + L L+ Q E+IPA G +++++ N N+ A DVTD VHP VAA A AA Sbjct: 364 DDPRVVLLELARQGYTTESIPAAGEKILVQRNGNV-----AFDVTDQVHPTVAAAASLAA 418 Query: 403 QMVGLDICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIISTMY 462 ++VGLDI GVD+V + L EQGG IVEVNA PGL MHL P+ G AR VG AI+ ++ Sbjct: 419 RIVGLDIAGVDLVVEDISKPLTEQGGAIVEVNAGPGLLMHLKPADGPARPVGRAIVDHLF 478 Query: 463 DDGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGP 522 + GRIP+V V G++G T RLI LL G VG+ DG+++ + Sbjct: 479 AADESGRIPIVGVTGSHGTTVVSRLIAWLLHLQGAYVGLACKDGLFLRQRPVLKKASDNW 538 Query: 523 RSARNVLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLA 582 + R VL + V+AAV E +L EGL +D C V VVTNI D L YI E ++ Sbjct: 539 DAGRQVLMNRMVEAAVFENGSKAILSEGLAYDWCQVGVVTNIDPADTLPEFYIDDAEQMS 598 Query: 583 VVKRVIVENVASTGTAVLNAADPMVAKMATSCPGSVTFFALDPTHPIMATHRAQGHRIVY 642 V R ++ V STG AVLNAAD VA MA+ C GSV FFA PT +M+ H A G R V+ Sbjct: 599 RVLRTQIDVVLSTGVAVLNAADERVADMASLCDGSVIFFAASPTEAVMSAHLASGQRAVF 658 Query: 643 -RDGDAIVA 650 RDG+ ++A Sbjct: 659 MRDGNIVLA 667 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,562,817 Number of extensions: 65420 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 248 Number of HSP's successfully gapped: 2 Length of query: 857 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 767 Effective length of database: 703,797 Effective search space: 539812299 Effective search space used: 539812299 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)