BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2022.p
         (178 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like prot...   258   1e-70
gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimo...    92   1e-20
gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimo...    85   2e-18

>gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like
           proterin [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  258 bits (660), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/178 (72%), Positives = 147/178 (82%)

Query: 1   MAIREILKMGDPRLLRQAQPVTDFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60
           M +REILKMGDPRLLR A+PV +F TPEL  L+ DMF TM A +GAGLAAPQIGV+L+LV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVKEFNTPELNALIADMFDTMHAAHGAGLAAPQIGVNLRLV 60

Query: 61  IFGFGHNQRYPDAPAVPETVLINPVLTPLSEEEEEGWEGCLSVPGMRGVVPRWRQLRYQG 120
           I+GF  N RYPDAP VPETVLINP L PLS E EEGWEGCLSVPG+RGVVPR+  L Y+G
Sbjct: 61  IYGFKQNTRYPDAPPVPETVLINPKLRPLSSEREEGWEGCLSVPGLRGVVPRFSSLHYEG 120

Query: 121 FDQNGHPIDRTVDGFHARVVQHECDHLQGILYPMRIRDFRQFGFTEILFPDLDPSQDD 178
           FDQ G  I R  DGFHARVVQHECDHL GILYPMRI DF QFG+ ++LFP++DP++DD
Sbjct: 121 FDQFGKAISRDADGFHARVVQHECDHLDGILYPMRIEDFSQFGYVDVLFPEMDPNEDD 178


>gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas
           arsenicoxydans]
          Length = 177

 Score = 92.0 bits (227), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 9/152 (5%)

Query: 1   MAIREILKMGDPRLLRQAQPVTDFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60
           M+   IL+  D RL + AQ VT      + RLV+DM QTM A +G GLAA Q+ V L+++
Sbjct: 1   MSKLAILQYPDERLHKVAQAVTQVDAG-IRRLVEDMAQTMYAADGIGLAATQVNVHLRVI 59

Query: 61  IFGFGHNQRYPDAPAVPETVLINPVLTPLSEEEEEGWEGCLSVPGMRGVVPRWRQLRYQG 120
           +     ++           V+INP +  +    E   EGCLSVP +   V R   +R + 
Sbjct: 60  LVDISEDRSQL-------LVMINPEVIKMGGSAE-CEEGCLSVPDVYEKVKRAAWIRLRA 111

Query: 121 FDQNGHPIDRTVDGFHARVVQHECDHLQGILY 152
            D NG P +   DG  A  +QHE DHLQG+++
Sbjct: 112 LDINGKPFEVQADGLKAMCIQHELDHLQGMVF 143


>gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas
           arsenicoxydans]
          Length = 176

 Score = 85.1 bits (209), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 1   MAIREILKMGDPRLLRQAQPVTDFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60
           M+I  IL+  D RL + A+PVT F    +  LV DM +TM    G GLAA Q+ V  Q++
Sbjct: 1   MSILNILRYPDSRLHKIAKPVTTFDA-RIKTLVADMAETMYDAPGVGLAASQVDVHEQVI 59

Query: 61  IFGFGHNQRYPDAPAVPETVLINPVLTPLSEEEEEGWEGCLSVPGMRGVVPRWRQLRYQG 120
           +      +    A        INP L  +S E +   EGCLSVPG+   V R  +++ + 
Sbjct: 60  VIDTSETRTELRA-------YINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRA 112

Query: 121 FDQNGHPIDRTVDGFHARVVQHECDHLQGILY 152
           +D +G   +   +G  A  +QHE DHL+G ++
Sbjct: 113 YDADGKQFELEAEGLLAVCIQHEMDHLKGKVF 144


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.144    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 376,938
Number of extensions: 15509
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 3
Length of query: 178
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 102
Effective length of database: 749,927
Effective search space: 76492554
Effective search space used: 76492554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)