BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2021.p
         (296 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094554|ref|YP_001099629.1| glucose-1-phosphate uridylyltra...   483   e-138
gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate gu...    70   2e-13
gi|134094384|ref|YP_001099459.1| dTDP-glucose pyrophosphorylase ...    60   1e-10

>gi|134094554|ref|YP_001099629.1| glucose-1-phosphate
           uridylyltransferase [Herminiimonas arsenicoxydans]
          Length = 291

 Score =  483 bits (1242), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/287 (80%), Positives = 258/287 (89%)

Query: 2   IKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGRN 61
           + KI+KAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLI YAVEEAVAAGITEM+FITGRN
Sbjct: 1   MNKIRKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIQYAVEEAVAAGITEMIFITGRN 60

Query: 62  KRAIEDHFDKAYELESELEAAGKQKLLDIVRNVVPKSVNCIFIRQSEPLGLGHAVLCARP 121
           KRAIEDHFD AYELE ELEAAGK  LL+ V+NV+PK VNCI+IRQS PLGLGHAVLCARP
Sbjct: 61  KRAIEDHFDTAYELERELEAAGKTALLEFVQNVIPKHVNCIYIRQSAPLGLGHAVLCARP 120

Query: 122 VVGEEPFAILLADDFMDTDPGVKPVMAQMTDIYAREGMSMLAVQEVPKSDTRQYGIVSAT 181
           VVG EPFA+LLADDFMDT  G  PV+AQM +I+ REG S+LAVQ+VP+++TRQYGIVSAT
Sbjct: 121 VVGNEPFAVLLADDFMDTPAGTAPVLAQMVEIFEREGSSILAVQDVPRAETRQYGIVSAT 180

Query: 182 PYQPDLERINAIVEKPAPEEAPSTLAVVGRYVLNSRIFHYLENIPRGAGGEIQLTDGIAK 241
           PYQ  LE+++AIVEKP PE+APSTLAVVGRY+L+ RIF YLEN+ +GAGGEIQLTDGIA 
Sbjct: 181 PYQDRLEQVDAIVEKPQPEDAPSTLAVVGRYILSGRIFDYLENVSQGAGGEIQLTDGIAA 240

Query: 242 LMQAESVLAYRYQGQRYDCGSKLGYLKAMVAMGLKHPETGPAFSEYL 288
           LM+ + VLAYRY+GQRYDCGSKLGYLKAMV MG KHPETG AF+EYL
Sbjct: 241 LMRDQKVLAYRYEGQRYDCGSKLGYLKAMVDMGRKHPETGAAFTEYL 287


>gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate
           guanyltransferase [Herminiimonas arsenicoxydans]
          Length = 391

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 28/225 (12%)

Query: 7   KAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGRNKRAIE 66
           KA+   AG G+R  P T   PK M+PI+ KP++ Y VE  V  GITE++       + IE
Sbjct: 2   KAMILAAGKGTRVQPLTYELPKPMIPILGKPVMEYLVEHLVKYGITEIMVNVSYLHQKIE 61

Query: 67  DHFDKAYELESELEAAGKQKLLDIVRNVVPKSVNCIFIRQSEPLGLGHAVLCARPVVG-- 124
           D+F +     +++  + +  + D    V+PK           P+G    +   +   G  
Sbjct: 62  DYFGEGQRFGAQIGYSFEGYMTDD-GEVMPK-----------PIGSAGGLKKIQEFGGFF 109

Query: 125 EEPFAILLADDFMDTDPGVKPVMAQMTDIYAREGMSMLAVQEVPKSDTRQYGIVSATPYQ 184
           +E   ++  D  +D D     + + + +   +  +  +  +EV    T  YG+V      
Sbjct: 110 DETTLVICGDALIDLD-----IKSALFEHRQKGALVSIITKEVAPEKTVDYGMVVT---- 160

Query: 185 PDLE-RINAIVEKPAPEEAPSTLAVVGRYVLNSRIFHYLENIPRG 228
            D E R+ +  EKP PEEA S LA  G Y+    +   LE IP G
Sbjct: 161 -DEEGRVLSFQEKPKPEEALSNLASTGIYIFEPEV---LELIPSG 201


>gi|134094384|ref|YP_001099459.1| dTDP-glucose pyrophosphorylase
           [Herminiimonas arsenicoxydans]
          Length = 301

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 33/232 (14%)

Query: 6   KKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGRNKRAI 65
           +K +    G G+R  P T +  K++LP+ DKP+I+Y +   + AGI +++ I+       
Sbjct: 11  RKGIILAGGSGTRLYPVTISVSKQLLPVYDKPMIYYPLTTLMLAGIRDILLISTPQDTP- 69

Query: 66  EDHFDKAYELESELEAAGKQKLLDIVRNVVPKSVNCIFIRQSEPLGLGHAVLCARPVVGE 125
              F        EL   G Q             +N  +  Q  P GL  A +  R  +  
Sbjct: 70  --RF-------QELLGDGSQ-----------WGINLTYAVQPTPDGLAQAFIIGRSFIDN 109

Query: 126 EPFAILLADDFMDTDPGVKPVMAQMTDIYAREGMSMLAVQEVPKSDTRQYGIVSATPYQP 185
            P A++L D+           + Q ++   R G ++ A       D  +YG+V       
Sbjct: 110 GPSALILGDNIY-YGHAFDQQLRQASE--RRSGSTVFAYH---VQDPERYGVVEFD---- 159

Query: 186 DLERINAIVEKPAPEEAPSTLAVVGRYVLNSRIFHYLENIPRGAGGEIQLTD 237
              R  +I EKP   +  S  AV G Y  + ++     +I   A GE+++TD
Sbjct: 160 KARRAISIEEKPLIPK--SNYAVTGLYFYDDQVCDIAASIKPSARGELEITD 209


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 571,746
Number of extensions: 23541
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 3
Length of query: 296
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 215
Effective length of database: 733,452
Effective search space: 157692180
Effective search space used: 157692180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)