BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2020.p
         (688 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsen...  1078   0.0  

>gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas
           arsenicoxydans]
          Length = 696

 Score = 1078 bits (2788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/687 (77%), Positives = 592/687 (86%), Gaps = 10/687 (1%)

Query: 1   MQDDLFS------AARPPQGAPEWL---LRARALRDELNRHNHSYYVLDEPSIPDAEYDR 51
           MQ DLFS      AA  P+  P+      RA  LR ELNRHN++YYVLD P +PDAEYD+
Sbjct: 1   MQPDLFSKASKQSAATQPKEIPDASDPSARAAWLRSELNRHNYAYYVLDNPIVPDAEYDQ 60

Query: 52  LFQELQALETAHPELLTADSPTQRVGAGPLPQFEPVRHDIPMLSLGNGFTDEDIEAFDKR 111
           LF+ELQALE +HPELL  DSPTQRVGA  L  F PV H +PMLSLGNGF DED+ AFDKR
Sbjct: 61  LFRELQALEASHPELLVFDSPTQRVGALALTAFPPVTHSVPMLSLGNGFEDEDVLAFDKR 120

Query: 112 VRDGLETLQEVRYATELKFDGLAISLRYENGVLVQAATRGDGTTGENVTANIRTVRAIPL 171
           V +GL + +EV YATELKFDGLAI+LRYE+GVLVQAATRGDG TGENVTANIRTVRAIPL
Sbjct: 121 VSEGLNSREEVEYATELKFDGLAINLRYEDGVLVQAATRGDGATGENVTANIRTVRAIPL 180

Query: 172 RLHGENVPQVIDVRGEVLMYKDDFARLNLRQRDAGQKEFANPRNAAAGSLRQLDSRITAQ 231
           RLH  N P+V+DVRGEV+MYK D A+LN RQRDAG KEFANPRNAAAGSLRQLDSRITAQ
Sbjct: 181 RLHTNNPPKVLDVRGEVMMYKADLAKLNARQRDAGAKEFANPRNAAAGSLRQLDSRITAQ 240

Query: 232 RTLRFFAYGIGVLEGAEMPASHSALLDWYQQLGLPVCKERAVVTGAAGLLDFFRGIGTKR 291
           R+LRFF+YGIG+LEGA+MPASHSALLDWY +LG+PVC ERAVV G  GLL+F++    KR
Sbjct: 241 RSLRFFSYGIGLLEGADMPASHSALLDWYAELGIPVCSERAVVRGVQGLLEFYKATSEKR 300

Query: 292 ESLPYEIDGVVYKVDRLDQQKHLGFVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAI 351
             LPYEIDGVVYKV+R+DQQ  LGFVSRAPRFA+AHKFPA+EALT VQDIEVQVGRTGAI
Sbjct: 301 PQLPYEIDGVVYKVNRVDQQLQLGFVSRAPRFAIAHKFPAEEALTTVQDIEVQVGRTGAI 360

Query: 352 TPVARLNPVFVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVACLPEKRPA 411
           TPVARL PV VGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVA +PE+RPA
Sbjct: 361 TPVARLAPVLVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVAFVPERRPA 420

Query: 412 DARAFVMPGACPVCGSPIVRAEDEAVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGE 471
            AR F+MP +CPVCGSPIVR EDEA+ARCSGGW+KC+AQRKGGL HF SRRAMD+EGLG+
Sbjct: 421 SARPFIMPSSCPVCGSPIVRLEDEAIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLGD 480

Query: 472 QLVEQLVDRQVVNTPADLYRLGLSALAELDRMAEKSAQNVLDALQKSKTTTLARFIYALG 531
           QLVEQLVD+ ++ T ADLY+LG  ALAELDRMA+KSAQNVLDAL+KSK TTLARFIYALG
Sbjct: 481 QLVEQLVDKHIITTAADLYKLGFRALAELDRMADKSAQNVLDALEKSKRTTLARFIYALG 540

Query: 532 IRHVGEATAKELARHFGGIDRLLAASEEQLLEVADIGPVVASSIRAFFSDPVNLELVEQL 591
           IRHVGEATAKELARHFG +D LL AS EQLLEVADIGPVVA+SI AFF+D +N+EL+EQL
Sbjct: 541 IRHVGEATAKELARHFGNLDALLQASPEQLLEVADIGPVVAASITAFFTDAMNIELIEQL 600

Query: 592 RAVGIHWPEEQGVDTGTKHLAGKTFVLTGTLPNLSRDEAAQLIEAAGGKVSGSVSKKTSY 651
           RA G+ WP E  V+   + LAGKTFVLTGTLP LSRD AA+ IEAAGGKV+GSVSKKTSY
Sbjct: 601 RAAGVTWP-EHVVENRPRPLAGKTFVLTGTLPTLSRDAAAEKIEAAGGKVAGSVSKKTSY 659

Query: 652 VVAGAEAGSKLAKAEELGIAILDEDGL 678
           VVAGAEAGSKLAKAEELG+ ILDE GL
Sbjct: 660 VVAGAEAGSKLAKAEELGVTILDETGL 686


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,291,189
Number of extensions: 55172
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 600
Effective length of database: 710,387
Effective search space: 426232200
Effective search space used: 426232200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)