BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2019.p
         (439 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094552|ref|YP_001099627.1| hypothetical protein HEAR1327 [...   420   e-119

>gi|134094552|ref|YP_001099627.1| hypothetical protein HEAR1327
           [Herminiimonas arsenicoxydans]
          Length = 368

 Score =  420 bits (1079), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/438 (51%), Positives = 283/438 (64%), Gaps = 70/438 (15%)

Query: 2   MMDLQTSLIILGAVFVAGVITYNKWQEHKARKTVERAFSSSHDDVLMSPDEPGLAPTEPV 61
           M DLQ SLI++G   V  VI+YNKWQE+KA+K+VERAFSSSHDDVLM             
Sbjct: 1   MTDLQASLIVIGGAIVVAVISYNKWQEYKAKKSVERAFSSSHDDVLM------------- 47

Query: 62  FTAPVAERSGAPASPAAPEMGRAEPSLYEVPERKPVSAPVKAYQEQAEFEPREPFLGEPP 121
                A    A A P   E  R EP+L                                 
Sbjct: 48  -----ASGDAAIAVPVHAE--RLEPTL--------------------------------- 67

Query: 122 LAEPARGAEAALDQALAQAQQSTVAQVIAGAEEQIETAPAFTPPPEMQARLAPKRELPVD 181
                 G+E +   A +   Q   AQ           AP    PP      A +RELPVD
Sbjct: 68  --SGGDGSEESFAHAESAEPQDADAQ---------HDAPVDMMPP------AEERELPVD 110

Query: 182 ELIDCNIPIALDNPLRGDKLLPLLQNLRHVGNKPVHFIGRTLEGDWEAIAHGSIYDALLA 241
            LIDC IP+AL   LRG+K+LP LQ+LRHVG+KPVHF G+ ++G WEAI HG IY +L+A
Sbjct: 111 YLIDCTIPLALTTQLRGEKILPALQSLRHVGSKPVHFAGQHIDGGWEAITHGGIYKSLMA 170

Query: 242 GAQLANRSNAINEIEYSELVMRLRDLTDSLAGEPELPDMPDVIRTAQALHQFIIDHDAQL 301
           G QLANRSNA+NE+EYSE VMRLR + D    +P++PDM +V+ TA++LH F+ ++DA+L
Sbjct: 171 GVQLANRSNALNELEYSEFVMRLRQIADDFDADPDVPDMAEVMVTARSLHHFVTEYDAKL 230

Query: 302 SVNVRSQGAPWSLATLLAALTRQGFDRRTEGYLVMQDGEGEVLFALSTNATPTDETTDRL 361
           SVNV+S GAPWS+ TLLAAL RQGFD R EG LVM DG+G VLF+LSTN T  ++TT RL
Sbjct: 231 SVNVQSNGAPWSVTTLLAALERQGFDVRPEGRLVMPDGDGGVLFSLSTNVTLAEDTTSRL 290

Query: 362 TLLLDVPRVAPSRDGYGALVACAKSLSARLGGIIVDDSDQPLTDEALSDIAEQVAAFYSA 421
           TLLLDVP VAP RDG+GA++ACA+SLS+RL G +VDDS+QPL+D +L++I  Q+  FY+ 
Sbjct: 291 TLLLDVPVVAPERDGFGAMIACARSLSSRLDGTLVDDSNQPLSDASLNEIGGQIEIFYAD 350

Query: 422 MESAEIPAGSTRALRLFS 439
           ME+A+IPAGS+RALRLF+
Sbjct: 351 MEAADIPAGSSRALRLFN 368


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 818,849
Number of extensions: 34377
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 354
Effective length of database: 720,272
Effective search space: 254976288
Effective search space used: 254976288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)