BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2017.p (584 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 348 6e-97 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 347 1e-96 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 342 4e-95 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 335 3e-93 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 332 3e-92 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 348 bits (892), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 214/393 (54%), Positives = 268/393 (68%), Gaps = 21/393 (5%) Query: 193 ILLVVGVVVSLMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTRAGD-TRSLLY 251 +L+V+G+V + + + +T S+ YAV +A +A+GDLT ++ + D T LL Sbjct: 189 LLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDETGQLLQ 248 Query: 252 EMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMTASNMDSLTA 311 + M + L I +R G + I +++IA+GNLDLSSRTEEQA SL TAS+M+ LT+ Sbjct: 249 ALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEELTS 308 Query: 312 TVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDIIGVIDGIAFQ 371 TVKQNADNARQA QLA +AS +A +GG VV +VV TM+GI S+RKI DIIGVIDGIAFQ Sbjct: 309 TVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQ 368 Query: 372 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSVQRVGSGSDQ 431 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DSV +V +GS Sbjct: 369 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKL 428 Query: 432 VARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQQNAALVEEA 491 VA AG TM EVV +V+R+TDI++EI AAS+EQ GIEQVN A+G+MDQVTQQNAALVEEA Sbjct: 429 VAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEA 488 Query: 492 AAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASVAAKPTLKPAAKPMVKPV 551 AAAA SL EQA L AV+ F+++G ++ VA + + + P + Sbjct: 489 AAAAESLNEQAANLAQAVSIFKLDG-----------VANSSRVATRLPVAASNAPATRQF 537 Query: 552 APLPPPSKAVALAKPASAGRSSPANTDGDWETF 584 A P P K +P S DWE F Sbjct: 538 AASPAPKKIANETRPVSG---------DDWEEF 561 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 347 bits (890), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 219/401 (54%), Positives = 275/401 (68%), Gaps = 17/401 (4%) Query: 186 DVSRLLGILLVVGVVVSLMMLAII--RRITGSLGGEPAYAVDIATRIANGDLTVQVQTRA 243 D SR +LLV+ S ++L ++ R + G LGGEP YA +A RIA GDLTV + R+ Sbjct: 188 DSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDLTVAIDLRS 247 Query: 244 GDTRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMTA 303 D S+L+ M MR+ LA ++ +R GT+ I + +IAAGNLDLSSRTEEQA +L TA Sbjct: 248 KDQTSMLFAMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQASALEETA 307 Query: 304 SNMDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDIIG 363 S+M+ +T+TVKQNA+N++QA LA AS A RGG VV QVV TM ITESSRKI DIIG Sbjct: 308 SSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSRKIVDIIG 367 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSVQ 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI DSV+ Sbjct: 368 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVE 427 Query: 424 RVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQQ 483 +V +GS V +AG TM E+V +QR+ DI+S+I+AA EQ GIEQVN A+ +MD+VTQQ Sbjct: 428 KVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQMDEVTQQ 487 Query: 484 NAALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASVAAKPTLKPA 543 NAALVEEAAAA+ SL++QA L V+ F+++ ++ A AA+ K Sbjct: 488 NAALVEEAAAASQSLQDQATHLSEIVSVFKLDNTQI------QAAHAGKPAAARSQAKSL 541 Query: 544 AKPMVKPVAPLPPPSKAVALAKPASAGRSSPANTDGDWETF 584 A + + +A S+ +A A S N+D DW F Sbjct: 542 ANTVRRTMAN-KAASQKIAFANQGS-------NSD-DWSEF 573 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 342 bits (876), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 219/398 (55%), Positives = 272/398 (68%), Gaps = 40/398 (10%) Query: 193 ILLVVGVVVSLMMLAI-----IRRITGSLGGEPAYAVDIATRIANGDLTVQVQTRA-GDT 246 I+ VVGV++ L+ +AI IR ITG L E D IA+GDLT ++ ++ + Sbjct: 191 IIAVVGVLLGLIGVAIYAFFLIRAITGPLK-EMLLHFDT---IASGDLTSNIEVKSRNEM 246 Query: 247 RSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMTASNM 306 +L+ + M++RL + +R+G+ AI EIAAGNLDLSSRTE+QA SL TAS+M Sbjct: 247 GTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSM 306 Query: 307 DSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDIIGVID 366 + LT+TVKQN DNARQA QLA SAS +A +GG VV VV TM+ I S+RKI DIIGVID Sbjct: 307 EELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVID 366 Query: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSVQRVG 426 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DSV +V Sbjct: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVD 426 Query: 427 SGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQQNAA 486 +G+ VA AG TM EVV +V+R+TDI+SEI AAS+EQ GIEQVN A+ +MD+VTQQNAA Sbjct: 427 AGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAA 486 Query: 487 LVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASVAAKPTLKPAAKP 546 LVE+AAAAA SL +QA L V+ F+++G + APQ L P A+P Sbjct: 487 LVEQAAAAASSLRDQATNLSTVVSVFKLQGHQS-APQ---------------NLVPQARP 530 Query: 547 MVKPVAPLPPPSKAVALAKPASAGRSSPANTDGDWETF 584 KA+ ++PA+ + N DGDWE F Sbjct: 531 ------------KALE-SRPAAIAHTGKGN-DGDWEQF 554 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 335 bits (860), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 192/317 (60%), Positives = 245/317 (77%) Query: 199 VVVSLMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTRAGDTRSLLYEMATMRE 258 V +L+ ++R + LGGEP YA I RIA GDL+ + TR GD SLL M M++ Sbjct: 198 VAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKGDRNSLLAAMQDMQQ 257 Query: 259 RLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMTASNMDSLTATVKQNAD 318 LA + IR+ ++ I + +IAAGN+DLS+RTE+QA SL TAS+M+ LTATVKQNA Sbjct: 258 NLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEELTATVKQNAG 317 Query: 319 NARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDIIGVIDGIAFQTNILALN 378 +A+QA QLA SAS+IA +G VV QVV TM+ I+ S+ +I DIIGVI+GIAFQTNILALN Sbjct: 318 HAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIAFQTNILALN 377 Query: 379 AAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSVQRVGSGSDQVARAGET 438 AAVEAAR GEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI+DS+++VG+G+ V +AG T Sbjct: 378 AAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGATLVDQAGST 437 Query: 439 MGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQQNAALVEEAAAAAGSL 498 M E+V+++ ++TDI+ EI+ AS EQ GIEQVN A+G+MD+VTQQNAALVEEAAAAAGSL Sbjct: 438 MNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVEEAAAAAGSL 497 Query: 499 EEQARRLKAAVATFQVE 515 +EQA L V+ F++E Sbjct: 498 QEQACSLVQVVSVFKLE 514 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 332 bits (851), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 213/364 (58%), Positives = 257/364 (70%), Gaps = 21/364 (5%) Query: 222 YAVDIATRIANGDLTVQVQTRAGD-TRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHE 280 YAV++A +A GDL +++ + D T LL + M + L + +R G E I +++ Sbjct: 222 YAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQ 281 Query: 281 IAAGNLDLSSRTEEQAGSLAMTASNMDSLTATVKQNADNARQAGQLANSASEIARRGGDV 340 IAAGNLDLSSRTEEQA SL TAS+M+ LT+TVKQNADNARQA QLA SAS +A +GG V Sbjct: 282 IAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVV 341 Query: 341 VGQVVQTMEGITESSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 400 V QVV TME I S++KI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV Sbjct: 342 VSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 401 Query: 401 RSLAQRSAQAAKEIKVLIEDSVQRVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAAS 460 R+LAQRSA AAKEIK LI DSV +V GS VA AG TM EVV++V+R+TDI+SEI AAS Sbjct: 402 RNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAAS 461 Query: 461 EEQRRGIEQVNLAVGEMDQVTQQNAALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVI 520 +EQ GIEQVN A+G+MDQVTQQNAALVEEAAAAA SL EQA +L AV+ F+++G V Sbjct: 462 QEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDG--VA 519 Query: 521 APQTASATVKAASVAAKPTLKPAAKPMVKPVAPLPPPSKAVALAKPASAGRSSPANTDGD 580 A A+ TV+ +AA + AK + P+ P K A+ G + Sbjct: 520 ASTPATKTVR--KIAAAASHHAPAKRAIAAPTPVSP--------KAATGG--------DE 561 Query: 581 WETF 584 WE F Sbjct: 562 WEEF 565 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 748,302 Number of extensions: 24128 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 15 Length of query: 584 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 497 Effective length of database: 713,682 Effective search space: 354699954 Effective search space used: 354699954 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)