BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2016.p (403 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094550|ref|YP_001099625.1| putative aminotransferase [Herm... 503 e-144 gi|161485636|ref|YP_001100411.2| aminotransferase AlaT [Herminii... 75 7e-15 gi|134094271|ref|YP_001099346.1| putative aspartate aminotransfe... 57 1e-09 >gi|134094550|ref|YP_001099625.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 312 Score = 503 bits (1295), Expect = e-144, Method: Compositional matrix adjust. Identities = 241/312 (77%), Positives = 270/312 (86%), Gaps = 2/312 (0%) Query: 93 ILPVIGSREALFSLTQTVVDPTRPGALVMCPNPFYQIYEGSAYLAGAEPYFVNSDPARNF 152 +LPV GSREALF+L QTV+DP++ ALV+CPNP YQIYEG+AYLAGA+PYFVN DPARNF Sbjct: 1 MLPVNGSREALFALAQTVIDPSQ-HALVVCPNPLYQIYEGAAYLAGAQPYFVNCDPARNF 59 Query: 153 APDFSQVPQEVWERVQLLFVCSPGNPTGAVLKLEDWKELFALSDRYGFVIASDECYSEIY 212 APDF+ + EVW RVQL++VCSPGNP GAVL L+DW ELFALSDRY FVIA+DECYSEIY Sbjct: 60 APDFAAITHEVWSRVQLVYVCSPGNPAGAVLTLDDWAELFALSDRYNFVIAADECYSEIY 119 Query: 213 FKQDPPLGGMEAARKLGRD-YRNLVCFSSLSKRSNVPGMRSGFVAGDAAILKKFLLYRTY 271 FK + PLGG+EAA KLGR Y L+ FSSLSKRSNVPGMRSGFVAGDA ILKKFLLYRTY Sbjct: 120 FKAEAPLGGLEAAHKLGRKGYPRLIGFSSLSKRSNVPGMRSGFVAGDAEILKKFLLYRTY 179 Query: 272 HGAAMSPVIQAASVLAWQDETHVQDNIAKYVTKFSQVTPLLQEVMDVALPDAAFYLWAKV 331 HG+AMSP +Q+AS+ AW DE HV DN KY+ KF+QVTPLLQEVMDV+LPDA FYLWAKV Sbjct: 180 HGSAMSPSVQSASIAAWNDEQHVIDNREKYIQKFNQVTPLLQEVMDVSLPDAGFYLWAKV 239 Query: 332 DKLVDISDTEFARRLYAEYNVTVLPGSYLAREAHGVNPGAGRIRMALVAEVEECLEAAQR 391 DKL I D EFA+RLYAEYNVTVLPGSYL REAHG+NPG RIRMALVAEV+ECLEAAQR Sbjct: 240 DKLAAIGDIEFAKRLYAEYNVTVLPGSYLGREAHGINPGQNRIRMALVAEVDECLEAAQR 299 Query: 392 IVAFTRKLAGQA 403 IV FT+KL+ A Sbjct: 300 IVEFTQKLSQSA 311 >gi|161485636|ref|YP_001100411.2| aminotransferase AlaT [Herminiimonas arsenicoxydans] Length = 407 Score = 74.7 bits (182), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 92/392 (23%), Positives = 166/392 (42%), Gaps = 49/392 (12%) Query: 28 AYRPISLGIGEPK---HPTPAFIQQALTDNLAGLASYPATLGSEALRGAIADWLQQRY-- 82 ++ I L IG P I Q + NL+ + Y + G A R AI + Q++ Sbjct: 32 GHKIIKLNIGNLATFGFDAPDEIVQDMIRNLSNASGYTDSKGLFAPRKAIMQYSQEKKIA 91 Query: 83 -----DILRPDPATEILPVIGSREALFSLTQTVVDPTRPGALVMCPNPFYQIYEGSAYLA 137 DI + A+E+ ++ S AL + G V+ P+P Y ++ + L+ Sbjct: 92 GVTIDDIYLGNGASEL--IVMSMNALLN----------TGDEVLVPSPDYPLWTAAVSLS 139 Query: 138 GAEPYFVNSDPARNFAPDFSQVPQEVWERVQLLFVCSPGNPTGAVLKLEDWKELFALSDR 197 G P D ++ PD + +++ + + V +P NPTGA+ +E +++ L+ Sbjct: 140 GGTPVHYVCDEQADWFPDIDDIRKKINSNTKAIVVINPNNPTGALYPVELLQQIVDLARE 199 Query: 198 YGFVIASDECYSEIYFKQDPPLGGMEAARKLGRDYRNLVCFSSLSKRSNVPGMRSGF--V 255 + ++ +DE Y ++ + ++ L D + F+ LSK G R+G+ V Sbjct: 200 HQLIVFADEIYDKVLYDG----AKHDSIASLADDVL-FITFNGLSKNYRACGYRAGWMIV 254 Query: 256 AGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQDETHVQDNIAKYVTKFSQVT------ 309 +G+ K ++ A+M A A Q +I V ++T Sbjct: 255 SGEKRYAKDYIEGLNML-ASMRLCANAPGQYAIQTALGGYQSINDLVGPGGRLTRQRDLA 313 Query: 310 -PLLQEVMDVAL--PDAAFYLWAKVD-KLVDI-SDTEFARRLYAEYNVTVLPGSYLAREA 364 LL E+ V P +A Y++ ++D K+ I D +FA +L AE +V ++ G+ Sbjct: 314 HKLLTEIPGVTCVKPKSALYMFPRLDPKMYPIKDDQDFAYQLLAEESVLIVQGT------ 367 Query: 365 HGVN-PGAGRIRMALVAEVEECLEAAQRIVAF 395 G N P R+ + ++ A RI F Sbjct: 368 -GFNCPTPDHFRVVFLPNSDDLTIAIGRIAHF 398 >gi|134094271|ref|YP_001099346.1| putative aspartate aminotransferase A [Herminiimonas arsenicoxydans] Length = 368 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 153/380 (40%), Gaps = 46/380 (12%) Query: 32 ISLGIGEPKHPTPAFIQQALTDNLA-GLASYPATLGSEALRGAIADWLQQRYDILRPDPA 90 I +GIGEP + A +A G Y + G LR AIA + Y + D A Sbjct: 13 IHMGIGEPDFTAAPSVLAAAAQAMADGRMQYTSATGLPELRAAIAAHYRDMYGV---DVA 69 Query: 91 -TEILPVIGSREALFSLTQTVV---------DPTRPGALVMCPNPFYQIYEGSAYLAGAE 140 + I+ G+ AL +V DP+ P C F ++GSA + Sbjct: 70 PSRIIITAGASGALLLACAALVEKGAEVLMSDPSYP-----CNRHFVAAFDGSAKM---- 120 Query: 141 PYFVNSDPARNFAPDFSQVPQEVWERVQLLFVCSPGNPTGAVLKLEDWKELF-ALSDRYG 199 + S P F V Q E+ + + + SP NPTG + ++ +++ + + G Sbjct: 121 ---IASGPEHRFQLSADMVQQNWGEQTRGVLLASPSNPTGTSIDEDELRKIVEVVRGKQG 177 Query: 200 FVIASDECYSEIYFKQDPPLGGMEAARKLGRDYRNLVCFSSLSKRSNVPGMRSGFVAGDA 259 F I DE Y + + P +A LG D ++ +S SK N+ G R G++ Sbjct: 178 FTIV-DEIYHGLRYDAAP-----FSALSLGDD---VIVINSFSKYFNMTGWRLGWLVVPE 228 Query: 260 AILKKFLLYRTYHGAAMSPVIQAASVLAWQDE--THVQDNIAKYVTKFSQVTPLLQEV-M 316 ++ S + Q A + + T + A++ + + P L+E+ Sbjct: 229 TLVPPIEKLAQNLFICASSLAQHAGLACFAPAAMTVYEARKAEFKRRRDYIVPALEELGF 288 Query: 317 DV-ALPDAAFYLWAKVDKLVDISDTEFARRLYAEYNVTVLPGSYLAREAHGVNPGAGRIR 375 V +PD AFY++A L D +D E + E V ++PG G + +R Sbjct: 289 KVPVMPDGAFYVYADCSALSDDAD-ELTIAMLNEAGVVMVPGLDF-----GPSTAHRYVR 342 Query: 376 MALVAEVEECLEAAQRIVAF 395 ++ +E EA R+ F Sbjct: 343 ISYATSMENLQEAIARLRIF 362 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 806,032 Number of extensions: 33910 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 3 Length of query: 403 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 319 Effective length of database: 723,567 Effective search space: 230817873 Effective search space used: 230817873 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)