BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2013.p
         (377 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094546|ref|YP_001099621.1| succinyl-diaminopimelate desucc...   679   0.0  

>gi|134094546|ref|YP_001099621.1| succinyl-diaminopimelate
           desuccinylase [Herminiimonas arsenicoxydans]
          Length = 375

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/374 (85%), Positives = 348/374 (93%)

Query: 3   MSKTLALTQELMSLSSVTPEDKGCQARLAELLTPLGFVCETIQSGEVTNLWARKGTAQPL 62
           MSKTLALT+EL++LSSVTPEDKGCQ+RL ELL+PLGFVCETI+S  VTNLWARKGTAQPL
Sbjct: 1   MSKTLALTEELIALSSVTPEDKGCQSRLIELLSPLGFVCETIESDGVTNLWARKGTAQPL 60

Query: 63  VVFAGHTDVVPTGPLEKWQSHPFQPTLRDGRLYGRGASDMKTSIAAMVVACEEFTAAHPE 122
           +VFAGHTDVVPTGPL++W S PF PT RDG+LYGRGA+DMKTSIAAMVVA EEF  AHP+
Sbjct: 61  LVFAGHTDVVPTGPLDQWTSPPFVPTQRDGKLYGRGAADMKTSIAAMVVAAEEFVHAHPD 120

Query: 123 HKGSIGFLITSDEEGPATDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIKNGRRGT 182
           HKGSIGFLITSDEEGPATDGTV+VCNALKARGEQLDYC+VGEPTS+  LGD IKNGRRG+
Sbjct: 121 HKGSIGFLITSDEEGPATDGTVIVCNALKARGEQLDYCVVGEPTSSDVLGDTIKNGRRGS 180

Query: 183 MSGKLTVKGIQGHIAYPQLARNPIHQAAPALAELVAEQWDAGNEYYLPTSWQISNIHGGT 242
           MSGKLTVKGIQGHIAYPQLARNPIHQ APALAELVAE+WD GNEYYLPTSWQ+SN+HGG 
Sbjct: 181 MSGKLTVKGIQGHIAYPQLARNPIHQCAPALAELVAEKWDDGNEYYLPTSWQVSNMHGGA 240

Query: 243 GASNVIPGEVVIDFNFRFSTASTVEGLQQRVHAILDKHGLEYDLKWTVGGLPFLTPRGDL 302
           GASNVIPG VVIDFNFRF TASTVEGLQQRVHAILDKHGLEYDLKW++ G PFLTP+G L
Sbjct: 241 GASNVIPGNVVIDFNFRFCTASTVEGLQQRVHAILDKHGLEYDLKWSISGYPFLTPKGSL 300

Query: 303 SDALSKAIKDETGLETELSTTGGTSDGRFIAQICPQVIEFGPPNDSIHKINEHIEVRYID 362
           SDA++ AIK ETG+ TELSTTGGTSDGRFIAQICPQV+EFGPPN SIHKI+EHIEVR+ID
Sbjct: 301 SDAMADAIKSETGVTTELSTTGGTSDGRFIAQICPQVVEFGPPNGSIHKIDEHIEVRFID 360

Query: 363 PLKNIYRKTLENLL 376
           PLKNIYR T+ENLL
Sbjct: 361 PLKNIYRHTMENLL 374


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 719,554
Number of extensions: 28948
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 294
Effective length of database: 726,862
Effective search space: 213697428
Effective search space used: 213697428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)