BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2011.p (660 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094544|ref|YP_001099619.1| ABC transporter ATP-binding pro... 1002 0.0 gi|134094319|ref|YP_001099394.1| ABC transporter ATP-binding pro... 293 2e-80 gi|134095629|ref|YP_001100704.1| ABC transporter ATP-binding pro... 254 8e-69 gi|134096461|ref|YP_001101536.1| putative ABC transporter ATP-bi... 213 3e-56 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 82 1e-16 >gi|134094544|ref|YP_001099619.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 656 Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/654 (76%), Positives = 565/654 (86%), Gaps = 7/654 (1%) Query: 11 RGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDYPARWRMAYVA 70 RG+KPLL+ VD+TLNPGDKIGLIGANGAGKSSLF +LRGELH DLG ID+P++WR+AYVA Sbjct: 2 RGIKPLLDKVDVTLNPGDKIGLIGANGAGKSSLFGLLRGELHADLGTIDFPSKWRVAYVA 61 Query: 71 QETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHVAELHTALADADAYTVR 130 QETP L+R AI+YAIDGD LR+LE ELA E++PD +G + +L++ALADADAYTVR Sbjct: 62 QETPPLERSAIDYAIDGDVTLRRLEEELAFLESEPDTADNGTLIGDLYSALADADAYTVR 121 Query: 131 SRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDLDAII 190 SR EQLLLGLGF++ QME+PVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDLDAII Sbjct: 122 SRGEQLLLGLGFTMAQMEQPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDLDAII 181 Query: 191 WLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFERQRSAQLELMA 250 WLEDWLKRY GTLL+ISHDRDFLDGVVNVIVHID+RKLKRYSGNYS FERQR+AQ+ L Sbjct: 182 WLEDWLKRYPGTLLVISHDRDFLDGVVNVIVHIDERKLKRYSGNYSGFERQRAAQMILAQ 241 Query: 251 GMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAAEFSFEFREPL 310 +EKQ RQRAHL+SFI+RFKA+A+KARQAQSRMKALSKMEELAPLRAAAEFSFEFREP Sbjct: 242 SALEKQTRQRAHLESFINRFKAQASKARQAQSRMKALSKMEELAPLRAAAEFSFEFREPA 301 Query: 311 SAPNPLLVMEKVNAGYHIEGKNGAPDADKIIVHGIDFSLQNGQRIGLLGVNGAGKSTLIK 370 +APNPLLVME V+AGY IE ++ + +K IV GI+FSLQ GQRIGLLGVNGAGKSTLIK Sbjct: 302 NAPNPLLVMENVDAGYRIENEDYSI-TEKKIVSGINFSLQIGQRIGLLGVNGAGKSTLIK 360 Query: 371 TVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVREQELRNFLGS 430 T+A E+ PLSG + GKGL IGYFAQHQVEMLRH+ESPLWHL +AP+VREQELRNFLGS Sbjct: 361 TIAAELQPLSGVSEFGKGLAIGYFAQHQVEMLRHEESPLWHLAHIAPNVREQELRNFLGS 420 Query: 431 FNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETREALTMALAQF 490 FNFNG M TS IAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETREALTMALAQF Sbjct: 421 FNFNGAMVTSKIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETREALTMALAQF 480 Query: 491 EGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAARNDAAAAAPL 550 EGTLV+VSHDRHLLRATTD+F+IVA+GKLQPFDGDLDDYKDWLFKTKLA +N AA A L Sbjct: 481 EGTLVVVSHDRHLLRATTDEFIIVADGKLQPFDGDLDDYKDWLFKTKLATKNAAAGNAAL 540 Query: 551 PTSSQP------VEAAPASLVDRKEQKRLEAEQRQKMSALKKPIEARIKRLDEQIAKLNV 604 P + A A+ +D++EQK+ EAE RQK++A KKPIE +IK+L+EQIAK N Sbjct: 541 PAVKEKSASVVAPAAPAAASIDKREQKKQEAEDRQKLAARKKPIELKIKKLEEQIAKRNA 600 Query: 605 RKGEIDARLASPDIYDAANKDELKTLITDQAYCSKELEQLENEWLEQQEALEQL 658 +K ++ LA P IYDAA K ELK L+ DQ + +KE+ QLE EWLEQQEALEQ+ Sbjct: 601 QKAVVETALADPLIYDAAKKKELKQLLADQTFYTKEVAQLEAEWLEQQEALEQV 654 >gi|134094319|ref|YP_001099394.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 533 Score = 293 bits (750), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 186/545 (34%), Positives = 288/545 (52%), Gaps = 35/545 (6%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDY 60 M+ +++Q G KPL EN+ + G++ GLIGANG GKS+ +L G+L P G + Sbjct: 1 MLSTANITMQFGPKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLDPSAGTVML 60 Query: 61 PARWRMAYVAQETPALDR-PAIEYAIDGD----AHLRQLEAELARAEAQPDDKHDGNHVA 115 R+ + Q+ A + ++ + G A + + +A A EA DD A Sbjct: 61 DPNERLGKLRQDQFAFEEMRVLDVVMMGHTEMWAAMSERDAIYANPEATDDDYM---KAA 117 Query: 116 ELHTALADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLL 175 +L A+ D YT SRA +LLLG G +++ + P+++ S GW++R+ LAQAL D+L Sbjct: 118 DLEAKFAEYDGYTAESRAGELLLGAGVAIDLHQGPMSNVSPGWKLRVLLAQALFSNPDIL 177 Query: 176 LLDEPTNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNY 235 LLDEPTN+LD++ I WLED L T++IISHDR FL+ V + +D LK Y GNY Sbjct: 178 LLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNQVCTHVADMDYGTLKIYPGNY 237 Query: 236 SAF----ERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKME 291 + + R+ QL A K + + A LQ F+ RF A +KARQA SR K + K++ Sbjct: 238 DDYMFASTQARNQQLANNA----KAKDKVAELQEFVRRFAANKSKARQATSRAKQIEKIK 293 Query: 292 ELAPLRAAAEFSFEFREPLSAPNPLLVM--EKVNAGYHIEGKNGAPDADKIIVHGIDFSL 349 + +P S P + EK +E + + D+ + + Sbjct: 294 ------------VDDIKPSSRAYPFVRFDGEKKLHRLAVEAETISKAYDRQLFKNFSIMV 341 Query: 350 QNGQRIGLLGVNGAGKSTLIKTVAG-EIDPLS---GTARLGKGLVIGYFAQHQVEMLRHD 405 + G+RI ++G NGAGK+TL++ + G EI L+ G + + +GY Q E D Sbjct: 342 EAGERIAIIGANGAGKTTLLRCIGGEEITGLAADQGRVKWAENANVGYMPQDPTEDFASD 401 Query: 406 ESPL-WHLTRLAPDVREQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPN 464 ++ W +Q +R+ LG F G S+ SGGEK R+ ++ R N Sbjct: 402 KNLTDWMGQWTQEGDDDQAVRSILGRLLFGGDDVKKSVRVLSGGEKGRMTYGKLMLGRHN 461 Query: 465 LLLLDEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDG 524 +LL+DEPTNH+D+E+ E+L +AL ++ GTL+ VSHDR + + + L + +G++ F G Sbjct: 462 VLLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRVLELKDGEIIDFQG 521 Query: 525 DLDDY 529 +DY Sbjct: 522 TYEDY 526 >gi|134095629|ref|YP_001100704.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 633 Score = 254 bits (650), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 211/675 (31%), Positives = 327/675 (48%), Gaps = 68/675 (10%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDY 60 +I L G PLL+ + +L +++GLIG NG GKSSL ++ G D G Sbjct: 3 VISLSNAQLAFGHVPLLDKAEFSLEATERVGLIGRNGTGKSSLLKIIAGTSKLDDGLFVM 62 Query: 61 PARWRMAYVAQETPALDRPAIEYAI-DGDAHLRQLEAELARAEAQ---PDDKHDGNHVAE 116 ++AYV QE ++ A+ G ++ L E Q DD + + Sbjct: 63 QQGIKIAYVEQEPHFSPETSVYDAVASGMGDMQVLLTEYDALTGQFGGDDDDALMERMHD 122 Query: 117 LHTALADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLL 176 + L ADA+ + + E L L + + + + SGG + R+ LA+AL+ D+LL Sbjct: 123 IQVKLDAADAWNLNHKVEATLDRLNLVKDSL---MGTLSGGMQKRVALARALVSAPDVLL 179 Query: 177 LDEPTNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYS 236 LDEPTNHLD +I+WLE L+ Y+G++L I+HDR FLD V I+ +D +L + GN+S Sbjct: 180 LDEPTNHLDFTSILWLEGLLRDYKGSVLFITHDRSFLDNVATRIIELDRGRLLSFPGNFS 239 Query: 237 AFERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPL 296 A++ +++ QLE+ ++ + A F+ + + K QA+ R + ++ L L Sbjct: 240 AYQVRKAEQLEI-------EEVENAKFDKFLAQEEVWIRKGVQAR-RTRDEGRVRRLEAL 291 Query: 297 RAA--------AEFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDADKIIVHGIDFS 348 R + + + + + ME +N Y DK+IV + Sbjct: 292 RLSRSARRDQQGQVKLDVSSGDRSGKIVAEMENINKVY----------GDKVIVKDFSAT 341 Query: 349 LQNGQRIGLLGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESP 408 + G ++GL+G+NGAGK+TL+K + GE +P SGT + G L I YF Q + ++ ++E Sbjct: 342 ILRGDKVGLIGLNGAGKTTLLKMILGEEEPDSGTVKQGTKLQIAYFDQMRAQL--NEEMS 399 Query: 409 LWHLTRLAPDVRE-----QELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRP 463 L D E + + +L F F A S + SGGE+ RL LA + + Sbjct: 400 LADTIAPGSDWVEINGQRKHVMTYLNDFLFAPERARSPVKSLSGGERNRLLLARLFAKPA 459 Query: 464 NLLLLDEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGK--LQP 521 N+L+LDEPTN LD++T E L L +EGT+ LVSHDR L Q +IVAEG + Sbjct: 460 NVLVLDEPTNDLDIDTLELLEELLEDYEGTVFLVSHDRTFLDNVVTQ-VIVAEGNGLWRE 518 Query: 522 FDGDLDDYKDWLFKTKLAARNDAAAAAPLPTSSQPVEAAPASLVDRKEQKRLEAEQRQKM 581 + G Y DW AA A P + VE +QK+L +++++M Sbjct: 519 YIG---GYSDW------ERVRPAAIPAGSPKGTGKVEVKTEVAAPVTKQKKLSYKEQREM 569 Query: 582 SALKKPIEARIKRLDEQIAKLNVRKGEIDARLASPDIYDAANKDELKTLITDQAYCSKEL 641 AL P+ IA+L + I +LA IY DE K L +Q + E+ Sbjct: 570 DAL--PV---------LIAQLEEEQKAITEKLADASIY-TRQADEAKRL--NQRFA--EI 613 Query: 642 EQLENEWLEQQEALE 656 + L E LE+ E +E Sbjct: 614 DGLLLEALEKWETIE 628 >gi|134096461|ref|YP_001101536.1| putative ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 555 Score = 213 bits (541), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 160/533 (30%), Positives = 263/533 (49%), Gaps = 40/533 (7%) Query: 16 LLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDYPARWRMAYVAQETPA 75 +L+++ L+ PG KIG++G NG+GKS+L ++ G +G + Y+ QE P Sbjct: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDTDIIGEARPAPNLNIGYLPQE-PQ 79 Query: 76 LD-----RPAIEYAIDGDAHLRQLEAELARAEAQPDDKHD------GNHVAELHTALADA 124 LD R A+E + + L + A A+PD D G A + T+ D Sbjct: 80 LDPEQTVRQAVEGGLGEVFEAKALLEAVYAAYAEPDADFDALAAEQGRLEAIISTSAGDN 139 Query: 125 DAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHL 184 + A+ L L + + SGG + R+ L + L+ D+LLLDEPTNHL Sbjct: 140 PEQQLEMAADAL------RLPPWDAKIGVLSGGEKRRVALCRLLLSKPDMLLLDEPTNHL 193 Query: 185 DLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFERQRSA 244 D +++ WLE +L+R+ GT++ I+HDR FLD I+ +D + GNYS++ Q+ Sbjct: 194 DAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGSGIPWKGNYSSWLEQKGD 253 Query: 245 QLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAAEFSF 304 +L+ +Q+ A ++ + K RQA+S+ + L++ EL+ Sbjct: 254 RLKQEEATESSRQKTIAKELEWV----RQNPKGRQAKSKAR-LARFNELS--------EH 300 Query: 305 EFREPLSAPNPLLVMEKVNAGYHIEGKNGAPD-ADKIIVHGIDFSLQNGQRIGLLGVNGA 363 E+++ + + + IE KN + D++++ ++F + G +G++G NGA Sbjct: 301 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKAFGDRLLIDNLNFRIPAGAIVGIIGPNGA 360 Query: 364 GKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDV---- 419 GKSTL K + G+ P SG +G + Q + + +D ++ D+ Sbjct: 361 GKSTLFKMITGKEQPDSGEVVIGTTARVSIVDQSRDSL--NDGKTVFEDVTGGADILTVG 418 Query: 420 -REQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLE 478 E R +LG FNF G + SGGE+ RL LA + N+LLLDEP+N LD+E Sbjct: 419 RFEMPSRAYLGRFNFKGGDQQKVVGNLSGGERGRLHLAKTLLMGGNVLLLDEPSNDLDVE 478 Query: 479 TREALTMALAQFEGTLVLVSHDRHLL-RATTDQFLIVAEGKLQPFDGDLDDYK 530 T AL AL +F G+++++SHDR L R T ++ FDG+ +Y+ Sbjct: 479 TLRALEDALLEFAGSVMVISHDRWFLDRIATHILAFEGNSQVSFFDGNYQEYE 531 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 118/237 (49%), Gaps = 32/237 (13%) Query: 315 PLLVMEKVNAGYHIEGKNGAPDADKIIVHGIDFSLQNGQRIGLLGVNGAGKSTLIKTVAG 374 P L +E + GY + + IVH + F+LQ GQ LLG +G GK+T+++ +AG Sbjct: 13 PHLSLESIRVGYRLGQQMHE------IVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAG 66 Query: 375 EIDPLS-GTARLG-KGLVIGYFA----QHQVEMLRHDESPLWHLT----------RLAPD 418 +PL+ G+ LG K + +F Q+ ++ D + HL+ +LA Sbjct: 67 -FEPLTEGSITLGGKEISNAHFTATPETRQIGVVFQDYALFPHLSVADNVGFGLRKLAAP 125 Query: 419 VREQELRNFLGSFNFNGTMATSSIAP--FSGGEKARLALALIVWQRPNLLLLDEPTNHLD 476 R+ + L G + P SGG++ R+ALA + +P+LLLLDEP ++LD Sbjct: 126 ERQARIAALL---TLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLD 182 Query: 477 LETREALTM----ALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDY 529 ++ RE L L + T VLV+HD+H A DQ ++ +G + +D + Y Sbjct: 183 VDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLY 239 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,198,385 Number of extensions: 50669 Number of successful extensions: 482 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 454 Number of HSP's successfully gapped: 27 Length of query: 660 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 572 Effective length of database: 710,387 Effective search space: 406341364 Effective search space used: 406341364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)