BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2009.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...   121   4e-29
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...   106   1e-24

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score =  121 bits (303), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 128/221 (57%), Gaps = 11/221 (4%)

Query: 6   LELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVSMMRG 65
            +++ +  P L  G+ YTL   L + +GG++ G +LA+AR+  ++ + + AA YV++MR 
Sbjct: 6   FDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMRS 65

Query: 66  TPLLVQIFVVYYGLPGL-----GIEFSPLTAGV-----LTLSLNAGAYLSESLRGAILGV 115
            PLL+ IF  Y+ +P +     G E  P+  G      +T  +   AY  E +R  I  +
Sbjct: 66  IPLLLVIFWFYFLVPVVLQTITGSE-RPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSI 124

Query: 116 TRGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLA 175
           ++GQ NA+Y++GL+Y Q +R +++PQA R  +P +    I L +D SLVS++ VT+ + A
Sbjct: 125 SKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGA 184

Query: 176 TKEVIAVTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLG 216
           + ++     R + +Y+  A +Y+ LS    ++  +L+K++ 
Sbjct: 185 SVKIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQKRIA 225


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score =  106 bits (264), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 16  LAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVSMMRGTPLLVQIFVV 75
           L  G+G+TL  A  + +   VLG ++ +AR    R +      YV + R  PLLVQ FV 
Sbjct: 21  LLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFVW 80

Query: 76  YYGLPGLG-------IEFSP----LTAGVLTLSLNAGAYLSESLRGAILGVTRGQWNASY 124
           Y+ +PGL        I   P        ++ L     + ++E +R  I  + RGQ NA Y
Sbjct: 81  YFVIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAGY 140

Query: 125 SVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTF 184
           ++GLT  QT R++++P A RI +P +++ L++LIK+T++   I + EL   T+E+  +TF
Sbjct: 141 ALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMTF 200

Query: 185 RPLPLYVAAAAIYWALSLCFEALQHRLEKK 214
           R    + AA  +Y  +++    +   +E++
Sbjct: 201 RYFEAFGAATLMYVVIAMLANRVMALVERR 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 369,123
Number of extensions: 13736
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)