BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2007.p (253 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095106|ref|YP_001100181.1| osmolarity response regulator [... 414 e-117 gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 186 1e-48 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 145 2e-36 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 138 3e-34 gi|134093856|ref|YP_001098931.1| two-component system response r... 136 9e-34 >gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans] Length = 255 Score = 414 bits (1065), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/255 (85%), Positives = 239/255 (93%), Gaps = 2/255 (0%) Query: 1 MNTTN--GNNTNTTTSANQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWI 58 MNTTN T +T+++Q KVLVVDDD+RLRDLLRRYL+EQGFNVVTAE+AQAMNKLW+ Sbjct: 1 MNTTNVPMKETGHSTNSHQTKVLVVDDDLRLRDLLRRYLSEQGFNVVTAESAQAMNKLWL 60 Query: 59 RERYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPK 118 RERYDLLVLDLMLPGEDGL+ICRRLRGAGD+TPIIMLTAKGEDVDRI+GLEMGADDY+ K Sbjct: 61 RERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIMLTAKGEDVDRIVGLEMGADDYIAK 120 Query: 119 PFNPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTG 178 PFNPRELVARI+AVLRR GPDE PGAPSETP++F FG+F LDLGTRTLKKN ET+ LTTG Sbjct: 121 PFNPRELVARISAVLRRIGPDEAPGAPSETPQSFTFGEFTLDLGTRTLKKNDETVPLTTG 180 Query: 179 EFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQT 238 EFSVLKVFAR+ARQPLSREKLME+ARGREYEVFDRSLDVQISRLRKLIEPDP+ PLYIQT Sbjct: 181 EFSVLKVFARHARQPLSREKLMELARGREYEVFDRSLDVQISRLRKLIEPDPSTPLYIQT 240 Query: 239 VWGLGYVFIPEGKPR 253 VWGLGYVFIPEGKPR Sbjct: 241 VWGLGYVFIPEGKPR 255 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 186 bits (471), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 100/232 (43%), Positives = 142/232 (61%), Gaps = 12/232 (5%) Query: 22 VVDDDIRLRDLLRRYLTEQGFNV----VTAENAQAMNKLWIRERYDLLVLDLMLPGEDGL 77 +++DD RL ++ YL + GF+V AE Q + E + +++LDLMLP DGL Sbjct: 1 MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60 Query: 78 AICRRLRGAG---DQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLR 134 +CR++R + PI+MLTAKG+ +DR++GLE+GADDY+PKPF PREL+AR+ AVLR Sbjct: 61 DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 135 RKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPL 194 R+ P+ FG +DL R ++ + + +T+ +F++L A A + L Sbjct: 121 RQHT-----TPATDGHVLRFGRLEIDLDARMIRLDDQDKPVTSYQFNLLAAMAERAGRVL 175 Query: 195 SREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 246 SRE+LM+ +G E FDRS+DV I RLR IE DP P I TV G GYVF Sbjct: 176 SREQLMDAVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVF 227 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 145 bits (366), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 9/214 (4%) Query: 39 EQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAK 98 E GF V A N + + + E+YDL++LD+MLP DG I + LR AG Q P++ LTA+ Sbjct: 2 EAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTAR 61 Query: 99 GEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFI 158 G DR+ GLE+GADDYL KPF EL+AR+ +LRR APS++ E E D I Sbjct: 62 GGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRG------SAPSQS-ERLEVADLI 114 Query: 159 LDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQ 218 LDL R + G+ I LT EFS+L++ AR + L R + ++ ++DV Sbjct: 115 LDLPRRKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVA 174 Query: 219 ISRLRKLIEPDPANPLYIQTVWGLGYVF-IPEGK 251 I RLR I+ DP P I TV G+GY P G+ Sbjct: 175 IRRLRAKID-DPFEPKLIHTVRGMGYTLDTPNGE 207 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 138 bits (348), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 125/229 (54%), Gaps = 8/229 (3%) Query: 18 FKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGL 77 K+L+V+D+++ + L++ L E GF V A N + L + YDL++LD+MLP DG Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 78 AICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKG 137 I + LR AG+ P + LTA+ DR+ GLE+GADDY+ KPF EL+AR+ +LRR Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRR-- 118 Query: 138 PDELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPLSRE 197 G PS + + D +LDL R + G+ ++LT EF +L+ R+ + L R Sbjct: 119 -----GIPSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRS 173 Query: 198 KLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 246 + + +DV I RLR ++ D P I T+ G+GYV Sbjct: 174 LIASQIWDINFNSDTNVIDVAIRRLRSKMD-DDYEPKLISTIRGVGYVL 221 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 136 bits (343), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 122/230 (53%), Gaps = 11/230 (4%) Query: 18 FKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGL 77 ++LV++D+ ++ D L R L E GF V A N + + E DL+VLD+MLP G Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 78 AICRRLRGAGD--QTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRR 135 + LR D P+I LTA+GE DR+ GLE+GADDYL KPF EL+ARI +LRR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 136 KGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPLS 195 +P + GD +D+ R + +NG+ I+LT EF +L + AR + LS Sbjct: 121 --------SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLS 172 Query: 196 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYV 245 R + +E +D + RLR I+ DP I T G+GYV Sbjct: 173 RSVIASQVWDINFESDTNVIDAAVRRLRSKID-DPFETKLIHTQRGMGYV 221 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 453,771 Number of extensions: 19663 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 24 Length of query: 253 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 173 Effective length of database: 736,747 Effective search space: 127457231 Effective search space used: 127457231 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)