BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2006.p (453 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 560 e-161 gi|134096138|ref|YP_001101213.1| two component sensor histidine ... 99 4e-22 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 91 8e-20 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 90 2e-19 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 79 4e-16 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 560 bits (1442), Expect = e-161, Method: Compositional matrix adjust. Identities = 281/443 (63%), Positives = 348/443 (78%), Gaps = 4/443 (0%) Query: 9 WFSNGLFWRTFFLLTFLITASMVAWVASFRMVERGPRAEQLAAQIVSVVTITRAALTHSA 68 W +GLFWRTFFLL FLI ASM AW+AS+R VE PRA Q+AAQ++SVVTITRAALTHSA Sbjct: 10 WIRSGLFWRTFFLLAFLIAASMAAWIASYRAVEETPRANQIAAQVISVVTITRAALTHSA 69 Query: 69 PEMRRELLFDLASNEGIRIYPLEKTDRIVPPEDSPIVPELEYYVRQSLDENTIFASSVNE 128 P++RRELLFDL+SNEGIR+YPLE TDR+ PP ++ +V ++ VR +L ++T FA +VN+ Sbjct: 70 PDLRRELLFDLSSNEGIRVYPLEDTDRVEPPIENSVVRSIQESVRAALGKDTRFARTVND 129 Query: 129 VEGFWISFNIDDDQYWLMLDRGRLDRTSSLQWLGWGSIALFLSLIGAVFISTLINQPLAR 188 V GFW+SF I DD+YWLMLDR R++ + +QW+GWG+ L LSL+GA+ IS LINQPLAR Sbjct: 130 VAGFWVSFTIADDEYWLMLDRSRVEASFGVQWIGWGAATLLLSLLGALMISGLINQPLAR 189 Query: 189 LTAAARAIAKGRQPEPLPESGPTEIEEANRSFNQMVADLNRIESDRALILAGISHDLRTP 248 LTAA RAIA G+ P PLPESGPTEI EAN SFNQMV DLNR+ESDRA++LAGISHDLRTP Sbjct: 190 LTAATRAIANGQWPAPLPESGPTEIREANHSFNQMVDDLNRVESDRAVVLAGISHDLRTP 249 Query: 249 LARMQLEVEMANLSDESRDGMHSDLAQMDSIIGQFLDYAKPFDTNNLETIDLAGLLEDVA 308 LARMQLEVEMA L D++R GM SDL QMD+IIGQFLDYAKP D+++ +++DL LL + A Sbjct: 250 LARMQLEVEMAGLPDDARKGMQSDLEQMDAIIGQFLDYAKPVDSSHFKSVDLTALLSEAA 309 Query: 309 AKSSRLADVKITTQITPATEVAGNGTELARVFSNLVENARRYGKTADSDCAEIHIRSRIE 368 +++RL DV++ + V GN ++ RV +NLVENARRYGK D+ +I I RIE Sbjct: 310 HEAARLPDVQVHPFMEDKVTVLGNAIDIKRVVNNLVENARRYGKATDAHHVDIDICCRIE 369 Query: 369 GQQVVVEVFDHGSGVPENECERLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKLVL 428 G +V++E+ DHG+GVP E RLLRPFTR+D+ARGQANG+GLGLAIV+RIV +H GKL L Sbjct: 370 GDKVMLEIADHGAGVPAEEIARLLRPFTRMDSARGQANGAGLGLAIVDRIVKRHGGKLHL 429 Query: 429 KGHEEHYGGLLVQISL--PLKGH 449 + GGL VQI L P K H Sbjct: 430 FNRDG--GGLTVQIVLANPRKRH 450 >gi|134096138|ref|YP_001101213.1| two component sensor histidine kinase protein [Herminiimonas arsenicoxydans] Length = 405 Score = 99.0 bits (245), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 21/244 (8%) Query: 209 GPTEIEEANRSFNQMVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLS--DESR 266 G E+ SFN+ A + + + +LA SH+LR+PLAR+++ +E+ + E R Sbjct: 175 GQDEVGRLASSFNRSAARIEALVDAQKALLANASHELRSPLARIRMAIELMGPAAQPEIR 234 Query: 267 DGMHSDLAQMDSIIGQFLDYAKPFD-----TNNLETIDLAGLLEDVAAKSSRLADVKITT 321 + ++ ++D +I + L A D T ETIDL LL + A+ D + Sbjct: 235 SELKRNIGELDQLIDEIL-LASRLDATADATQTFETIDLTALLAEECARIGAQLDAQ--- 290 Query: 322 QITPATEVAGNGTELARVFSNLVENARRYGKTADSDCAEIHIRSRIEGQQVVVEVFDHGS 381 A E++G+ L R+ NL+ENARRYG +D + G V+++V D G Sbjct: 291 ----AIELSGDARLLRRLVRNLLENARRYG----NDTPITVTLAAAPGNTVLLQVCDGGP 342 Query: 382 GVPENECERLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKLVLKGHEEHYGGLLVQ 441 GVP E E + PF R+ A + G GLGL++V +I +H G +V +E G + Sbjct: 343 GVPVAERENIFEPFYRVAGASEREGGVGLGLSLVRQIARRHGGDVVYVARDEP--GSCFR 400 Query: 442 ISLP 445 ++LP Sbjct: 401 VTLP 404 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 91.3 bits (225), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 143/292 (48%), Gaps = 26/292 (8%) Query: 152 LDRTSSLQWLGWGS-IALFLSLIGAVFISTLINQPLARLTAAARAIAKGRQPEPL-PESG 209 LD + W W + I ++L+ A F ++P+ +++ RAI + L P Sbjct: 171 LDMFKRILW--WATLIVALIALVVAWFAVQWGHRPIRKVSREIRAIRSSQLDVRLSPTDV 228 Query: 210 PTEIEEANRSFNQMVADLNRIESDRALIL---AGISHDLRTPLARMQLEVEMA----NLS 262 P E+ E SFN M L RIE A + A I+H+LRTP+ + + ++A + Sbjct: 229 PIELAELAVSFNDM---LGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSA 285 Query: 263 DESRDGMHSDLAQMDSI---IGQFLDYAKP-FDTNNLE--TIDLAGLLEDVAAKSSRLA- 315 DE R+ ++S+L + D + IG L A+ D NL D+ GL++ + LA Sbjct: 286 DEYREVLYSNLEEFDRLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAE 345 Query: 316 DVKITTQITPATE-VAGNGTELARVFSNLVENARRYGKTADSDCAEIHIRSRIEGQQVVV 374 D IT ++ + + + + R SNL+ NA RY S +H + ++ + Sbjct: 346 DANITLTLSGQVKPIIADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQ----DAKRTTI 401 Query: 375 EVFDHGSGVPENECERLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKL 426 V + G + E++ +L F R+D +R + +G+GLGLAIV I+ H+GK+ Sbjct: 402 CVENPGEQIAEDDLPKLFDRFFRVDPSRQRKSGAGLGLAIVKSIIEAHDGKV 453 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 165/363 (45%), Gaps = 42/363 (11%) Query: 121 IFASSVN----EVEGF-----------WISFNIDDDQYWLMLDRGRLDRTSSLQWLGWGS 165 IF S+ N ++EGF W ++ D + + + + R + S Sbjct: 48 IFTSAPNIQLQQIEGFGFKSLSLRGKRWRVYSEADQDRIIQVAQPKAVRNEMAASMALRS 107 Query: 166 IALFLSLIG--AVFISTLINQPLARLTAAARAIAK--GRQPEPLP-ESGPTEIEEANRSF 220 + FL +I A+FI ++ + L L ARAI + EPLP E P E++ + Sbjct: 108 LLPFLVMIPVLALFIWIVVGRSLYPLHHLARAIGRRSSNALEPLPGERYPPELQPMLAAL 167 Query: 221 NQMVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSDESRD------GMHSDLA 274 N ++ L++ + +A +H+LRTPL ++L++++ ++ R +H L Sbjct: 168 NDLLTRLDQTLVTQRAFVADAAHELRTPLTALKLQLQLVERENDDRQRATGFRKLHERLN 227 Query: 275 QMDSIIGQFLDYAKP---FDTNNLETIDL----AGLLEDVAAKSS-RLADVKITT---QI 323 + ++ Q L A+ + + IDL A ++ D A ++ + D+ I Q Sbjct: 228 RATHLVQQLLTLARHEYRIADRSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQG 287 Query: 324 TPATEVAGNGTELARVFSNLVENARRYGKTADSDCAEIHIRSRIEGQQVVVEVFDHGSGV 383 + A + GN L + NLV+NA RY T ++ + + V++ V D+G G+ Sbjct: 288 SDAAMITGNQDSLRILLGNLVDNAVRY--TPSHGRVDVTVNTSTADHTVLLRVKDNGPGI 345 Query: 384 PENECERLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKLVLKGHEEHYGGLLVQIS 443 P + ER+ F R D G++ GSGLGL I I +H + L + GGL+V + Sbjct: 346 PVQDQERVFDRFYRRD-GTGES-GSGLGLFIAKTIATQHEATIELSTADSK-GGLIVTVR 402 Query: 444 LPL 446 PL Sbjct: 403 FPL 405 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 26/237 (10%) Query: 227 LNRIESDRAL--ILAGISHDLRTPLARMQLEVEMANLS--------DESRDGMHSDLAQM 276 L R+ES+R +L+ +SHDLRTPL + E +S E +H + +M Sbjct: 676 LVRMESERLRNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDEARRM 735 Query: 277 DSIIGQFLDYAK------PFDTNNLETIDLAGLLEDVAAKSSRLADVKITTQITPATE-V 329 +++ LD A+ F+ L+ ++ G + A S +A +I T++ P V Sbjct: 736 SNLVSNLLDMARIQSGEVKFNLQWLQFEEVVG--SALRASQSAIAHHEIKTRLAPDLPLV 793 Query: 330 AGNGTELARVFSNLVENARRYGKTADSDCAEIHIRSRIEGQQVVVEVFDHGSGVPENECE 389 + + RV NL+ENA +Y + I I + I G+ + V V+D+G G+P + E Sbjct: 794 RFDAVLIERVLCNLIENAAKYTPAG----SRIVIAAEISGRFLEVSVYDNGPGLPAGQEE 849 Query: 390 RLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKLVLKGHEEHYGGLLVQISLPL 446 + FTR + G GLGLAI IV H G ++ GG + +LPL Sbjct: 850 AIFDKFTRGER-ESATPGVGLGLAICRAIVEAHQG--TIRAAHSPDGGASINFTLPL 903 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 807,107 Number of extensions: 31821 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 14 Length of query: 453 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 368 Effective length of database: 720,272 Effective search space: 265060096 Effective search space used: 265060096 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)