BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2002.p
         (423 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094966|ref|YP_001100041.1| lysophospholipid transporter Lp...   611   e-176
gi|134094438|ref|YP_001099513.1| hypothetical protein HEAR1209 [...    56   3e-09

>gi|134094966|ref|YP_001100041.1| lysophospholipid transporter LplT
           [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  611 bits (1575), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/382 (79%), Positives = 347/382 (90%)

Query: 39  MTPLLKLFFVLSYVLLAAFVGAFADAFPKGKVMLVTNMIKIAGCSLMFFTVHPLLAYAVV 98
           MTPLLKLFFVLSYVLLAAFVGAFAD+ PKG+VM +TNMIKI GC +MFF VHPL+AYAVV
Sbjct: 1   MTPLLKLFFVLSYVLLAAFVGAFADSLPKGRVMFITNMIKIVGCGMMFFDVHPLIAYAVV 60

Query: 99  GFGAAAYSPAKYGILTELLPPEKLVAANGWIEGLTVGSIIMGTVLGGALVNPKISAVILS 158
           GFGAAAYSPAKYGILTELLP EKLVAANGWIEGLTV SII+GTV+GGAL+NP I+A +L+
Sbjct: 61  GFGAAAYSPAKYGILTELLPAEKLVAANGWIEGLTVSSIILGTVMGGALINPSIAAKLLA 120

Query: 159 FDFPMIDLPIDTPTEAALCIISCIYIIAALFNFYIPDTGARYEHQERNPVRLIVDFANCF 218
           FDFP  D  IDTP E ALCII+ IY++AALFN  IPDTGARY HQER+P++LI DF +CF
Sbjct: 121 FDFPFFDFGIDTPAETALCIIAVIYLLAALFNLRIPDTGARYPHQERHPIKLISDFVHCF 180

Query: 219 TTLWKDKLGQISLAVTTLFWGAGATLQFIVLKWAEKSLHMPLDKAAILQGIVAVGVALGA 278
           TTLW D+LGQISLAVTTLFWGAGATLQFIVLKWA  SL M LD+AAILQG+VAVGVA+GA
Sbjct: 181 TTLWNDRLGQISLAVTTLFWGAGATLQFIVLKWAGHSLGMQLDEAAILQGVVAVGVAIGA 240

Query: 279 VTAARFVPLKKSLTVMPLGIIMGIVVMLMTTTTSVWVAYPLLVIVGALSGYFVVPMNALL 338
           V AARFVPL+KSL+VMPLG+IMG+VV++MT   +VW+AYPLLV+VGALSGYFVVPMNALL
Sbjct: 241 VAAARFVPLRKSLSVMPLGVIMGVVVIIMTMVHTVWLAYPLLVLVGALSGYFVVPMNALL 300

Query: 339 QHRGHVLMSAGHSIAVQNFNENLSVLTMLVLYAFMVRMNLDVNTVIIIFGSFVAGIMYLI 398
           QHRGHVLMSAGHSIAVQNFNENLSVLTML+LYA M++++L++N VI++FG FV+GIM LI
Sbjct: 301 QHRGHVLMSAGHSIAVQNFNENLSVLTMLLLYALMIKLDLNINIVIVLFGLFVSGIMVLI 360

Query: 399 MRRHAANQREHDSLALIGEDKH 420
           MRRHAANQREHDSL+LIGE KH
Sbjct: 361 MRRHAANQREHDSLSLIGEHKH 382


>gi|134094438|ref|YP_001099513.1| hypothetical protein HEAR1209
           [Herminiimonas arsenicoxydans]
          Length = 392

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 135/320 (42%), Gaps = 43/320 (13%)

Query: 47  FVLSYVLLAAFVGAFADAFPKGKVMLVTNMIKIAGCSL----MFFTVHPLLAYAVVGFG- 101
           F+L +VL +A  G  AD F K  ++    +++IA   L     F     LL  AV G G 
Sbjct: 14  FILPFVLFSAIAGQLADKFEKSGLVRYIKLLEIAIMLLAAVGWFRHDLWLLIAAVAGMGL 73

Query: 102 -AAAYSPAKYGILTELLPPEKLVAANGWIEGLTVGSIIMGTVLGGALVNPKISAVILSFD 160
            +A + P KY  L + L P++L+  NG +E  T   I++G VLG  LV  K         
Sbjct: 74  HSALFGPVKYAYLPQKLTPDELMGGNGLVEMGTFVGILLGEVLGAVLVLHK--------- 124

Query: 161 FPMIDLPIDTPTEAALCIISCIYIIAALFNFYIPDTGARYEHQERNPVRLIVDFANCFTT 220
                 P      A   I   I +   L +  IP + A     + N   L  +       
Sbjct: 125 ------PWGIELVAGGTI--AIAVAGWLASRAIPVSPAPAPELKIN-WNLFTESVRNIRF 175

Query: 221 LWKDKLGQISLAVTTLFWGAGATLQFIVLKWAEKSLHMPLDKAAILQGIVAVGVALGAVT 280
              ++   +++   + FW  GA +      +A+++LH       +L  I ++G+  G++ 
Sbjct: 176 SRHNRPVFMAMLANSWFWFYGAIVLAQFPMYAKQTLHGDHSIFVLLLTIFSLGIGAGSLL 235

Query: 281 AARFVPLKKSLTVMPLGI----IMGIVVMLMTT---TTSVWVAYPLL------------V 321
             R       + ++PLG     I GI + L +T    T++  A   L            +
Sbjct: 236 CERLSRHTVEIGLVPLGAIGLSIFGIDLFLSSTAYANTNLVDASGFLQQAGSIRILLDCL 295

Query: 322 IVGALSGYFVVPMNALLQHR 341
           ++GA  G ++VP+ AL+Q R
Sbjct: 296 LIGAFGGVYIVPLFALIQTR 315


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 697,224
Number of extensions: 25362
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 339
Effective length of database: 723,567
Effective search space: 245289213
Effective search space used: 245289213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)