BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2001.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094967|ref|YP_001100042.1| hypothetical protein HEAR1761 [...   274   4e-75

>gi|134094967|ref|YP_001100042.1| hypothetical protein HEAR1761
           [Herminiimonas arsenicoxydans]
          Length = 325

 Score =  274 bits (701), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 167/330 (50%), Positives = 204/330 (61%), Gaps = 26/330 (7%)

Query: 10  QMRFHQRWPELRDPHVRALAWLLYAPDLLAPEAACWEGRIASL--GVLSPEVAGWLHDLQ 67
           Q +FH+ W  L DPHVRALAWLL APDLL P A  W+G+IA+L  G+L+  +  WL  + 
Sbjct: 14  QAQFHRSWGHLNDPHVRALAWLLVAPDLLDPHAPQWQGKIAALPAGMLA-GIYAWLTAMD 72

Query: 68  YDPALNAALHAHMAQQPSARLGGRYAEKLLGFYLRQQDCLVAANLQVHNQGPKRETLGEF 127
            +PA    LH ++  QP ARLG RYAEKL+ FYL +Q+ L A ++QV  +  K  T+GEF
Sbjct: 73  SEPA---ELHRYLDLQPFARLG-RYAEKLMAFYLERQNVLFAHSVQV--RAGKNSTIGEF 126

Query: 128 DFLVRSPEAESDGGVVHWEFATKFYLLQGRDSAARQAADAFVGPNLADSLGRKMRKIMQH 187
           DFL+       D  +VHWEFATKFYLL+   S A   AD FVGPNLAD+LG KM KI+  
Sbjct: 127 DFLL-----HLDDQLVHWEFATKFYLLES--SGAGNDADYFVGPNLADTLGAKMHKILDR 179

Query: 188 QLMLSSHPAAQAVLPAPVVAARALVKGWLFYRQGEALVLPPAMGIAADHCRGFWCDASGL 247
           QL+LS+HPAAQ  LP  V  A+ALVKGWLFY   +  +   A G A +HCRGFWC  S L
Sbjct: 180 QLLLSAHPAAQIHLPEHVSKAQALVKGWLFYPDVDLEM--NACGTAHEHCRGFWCACSDL 237

Query: 248 QALDDGSDDKMRYALLPRLSWLAPARLPPEQGMSLTQLLLRLEEMFRADDNPVMVAQCRL 307
             L        RYA+LPRL WLAPA LP  Q M    L   L E F  D  PV+VA   +
Sbjct: 238 AHL-----RAERYAILPRLQWLAPASLPLAQTMDQQTLQEYLSEYFVHDTMPVLVALLEV 292

Query: 308 EQGAQPELLETARAFIVPPQWEARAADTVR 337
           + G     LET+R FIVP  W  RA   ++
Sbjct: 293 KNGTG---LETSRGFIVPDDWRTRAGQRIK 319


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 666,837
Number of extensions: 26651
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)