BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1999.p
         (164 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094969|ref|YP_001100044.1| putative ribosomal-protein-alan...   159   7e-41

>gi|134094969|ref|YP_001100044.1| putative ribosomal-protein-alanine
           acetyltransferase [Herminiimonas arsenicoxydans]
          Length = 166

 Score =  159 bits (402), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 107/166 (64%), Gaps = 2/166 (1%)

Query: 1   MSAVELPPTVSHP--RYGILQFGVMSAADLDAVVQIEDAVYSHPWTRGNFQDSLYSGYQA 58
           MS+V+ P     P  R   L F  M  +D+  V+ IE+ VY  PWTRGNF DS+ SGY+ 
Sbjct: 1   MSSVQSPIPQPAPVARPLKLYFSRMQPSDVSDVLAIENDVYPFPWTRGNFLDSISSGYET 60

Query: 59  QTLRDARGQLLGYFLVMLAVDEAHLLNISVAAAHQHQGLGRLLLDRATAVARQHQMRMML 118
             LRDA G L GYFL+M +VD+AHLLNI+V       G+G LLL++A A+ ++ +++ +L
Sbjct: 61  WILRDAAGTLNGYFLLMPSVDDAHLLNITVHRDLHGCGIGLLLLNKAKAIVQERKLQALL 120

Query: 119 LEVRESNLHAAKVYRHYGFTEIGRRKNYYPAANQTREGAIVMSLPL 164
           LEVR SN  A K+Y  YGF  IG RK YYPA N  RE AIVM L L
Sbjct: 121 LEVRPSNTRAEKIYERYGFARIGIRKGYYPAPNNQREDAIVMKLAL 166


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 295,358
Number of extensions: 10514
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 89
Effective length of database: 753,222
Effective search space: 67036758
Effective search space used: 67036758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)