BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1998.p
         (239 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094970|ref|YP_001100045.1| glycoprotein endopeptidase acti...   224   4e-60

>gi|134094970|ref|YP_001100045.1| glycoprotein endopeptidase
           actin-like ATPase domain [Herminiimonas arsenicoxydans]
          Length = 232

 Score =  224 bits (570), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 136/236 (57%), Positives = 169/236 (71%), Gaps = 6/236 (2%)

Query: 1   MSTILAIETSTELASAALLYRGELIARQSAGAQTHSDAILPMIQHLLADAGLALSQCDAL 60
           MSTILAIETS+ELASAALL+   + + ++AG  THS +ILPM+Q LLA AGLAL+ CDA+
Sbjct: 1   MSTILAIETSSELASAALLHGAVVTSAEAAGVTTHSQSILPMVQDLLARAGLALADCDAI 60

Query: 61  AFGVGPGSFTGVRTACGVVQGLAFGCDRPVVPVVTLEAAAQACHAEDANAVEVLAILDAR 120
           AFG GPGSFTGVRTACG+ QGLA+G D P++P VTL A AQACH E+  A +VLA++DAR
Sbjct: 61  AFGSGPGSFTGVRTACGIAQGLAYGADLPLLPTVTLLALAQACH-EETGACDVLAVMDAR 119

Query: 121 MGEVYWARYRSRLDGGWEVLAEPALSPAARVTIDGRPYACGNGLAVYAEHFTESFCGSRF 180
           MGEVYWA+Y  R D  W+++  P LS A+ V   G   ACGNGL  Y + F      S F
Sbjct: 120 MGEVYWAQY--RWDREWQIVIAPTLSAASDVMPIGEVVACGNGLKAYEKDFAAR---SFF 174

Query: 181 AAVYPQAMPHARHVATLGQMHFARGLALPAEEAQPLYLRNKVALTTAEREERDAAK 236
            A   + +PHA  +ATLG + FA+G  + A  A+PLYLRNKVALTT ER E+ A +
Sbjct: 175 RAEMKEWVPHAAQIATLGALAFAQGQGVAAGVAEPLYLRNKVALTTNERLEKAAKE 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 435,603
Number of extensions: 17394
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 160
Effective length of database: 740,042
Effective search space: 118406720
Effective search space used: 118406720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)