BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1997.p
         (142 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094971|ref|YP_001100046.1| putative thioredoxin-like prote...   153   3e-39

>gi|134094971|ref|YP_001100046.1| putative thioredoxin-like protein
           (partial) [Herminiimonas arsenicoxydans]
          Length = 138

 Score =  153 bits (387), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 95/138 (68%)

Query: 1   MSYQKLDQTNRRQLAEALRNDTWVVACLCANWCGSCREYEAAFQAWAARYPQHHFAWIDI 60
           MS   L+  N+ QLA+ +++D WVVACLCA WC  C  Y   F   AA++P   F WIDI
Sbjct: 1   MSSITLEPENQHQLAQRMQDDVWVVACLCAAWCDVCTSYRPGFDELAAQHPDKLFIWIDI 60

Query: 61  EDQADLVGDLDIDNFPTLLIERGATVAFFGPMEPDTRLAERILLAQVDKSDAELQSEASS 120
           ED+ADL+GD D++NFPTLLI+RG  V F+G   PD R+A R++ A  DK+DAEL+ +A S
Sbjct: 61  EDRADLIGDFDVENFPTLLIQRGDDVMFYGTTIPDHRIAHRLITAHADKTDAELKMQAHS 120

Query: 121 SAERRSWQQDCSLLDKLA 138
           SAE RSWQ + +L   LA
Sbjct: 121 SAEYRSWQVERNLRKALA 138


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 256,618
Number of extensions: 9262
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 69
Effective length of database: 759,812
Effective search space: 52427028
Effective search space used: 52427028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)