BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1994.p
         (428 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094515|ref|YP_001099590.1| aspartate kinase [Herminiimonas...   709   0.0  

>gi|134094515|ref|YP_001099590.1| aspartate kinase [Herminiimonas
           arsenicoxydans]
          Length = 417

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/417 (86%), Positives = 388/417 (93%)

Query: 12  MALYVHKYGGTSMGSIERIQNVAKRVAKWHDAGHQIVVVPSAMSGETNRLLGMAKEIMAQ 71
           MAL VHKYGGTSMGS ERI+NVA+RVAKWHDAG+QIVVVPSAMSGETNRL+G+AKE+M  
Sbjct: 1   MALIVHKYGGTSMGSTERIKNVARRVAKWHDAGYQIVVVPSAMSGETNRLIGLAKELMPH 60

Query: 72  PDGRELDMLASTGEQVSVALLAIALQALGKQAVSYAGWQVPIKTDSAFTKARIRSIDDAK 131
           P+ RELDMLASTGEQVSVALLA+AL ++GK+AVSY GWQ  IKTDSAFTKARI+SIDD K
Sbjct: 61  PNPRELDMLASTGEQVSVALLAMALHSIGKEAVSYTGWQAGIKTDSAFTKARIQSIDDVK 120

Query: 132 VRKDLNAGKIVIITGFQGVDADGNITTLGRGGSDTSAVAVAAAMKAAECLIYTDVDGVYT 191
           V+KDL+AG+IVIITGFQGVD DGNI TLGRGGSDTSAVAVA A++A ECLIYTDVDGVYT
Sbjct: 121 VKKDLDAGRIVIITGFQGVDEDGNIATLGRGGSDTSAVAVAVALEAKECLIYTDVDGVYT 180

Query: 192 TDPRVVSDARRLKTVTFEEMLEMASLGSKVLQIRSVEFAGNYKMPTRVLSSLTDPLTPLA 251
           TDPRVVS+ARRL TVTFEEMLEMASLGSKVLQIRSVEFAGNYKMPTRVLSSLTDP+  L 
Sbjct: 181 TDPRVVSEARRLNTVTFEEMLEMASLGSKVLQIRSVEFAGNYKMPTRVLSSLTDPMMSLE 240

Query: 252 EEAASGTLISFEEDKNMEQATITGIAFSRDEAKITVLGVPDRPGIAYQILGPVADANIEV 311
           EEA SGTLISFEED  MEQA ITGIAFSRDEAKITVLGVPDRPGIAYQILGP+A ANIEV
Sbjct: 241 EEAKSGTLISFEEDTKMEQAAITGIAFSRDEAKITVLGVPDRPGIAYQILGPIAAANIEV 300

Query: 312 DMIIQNQSVEGKTDFTFTVPRGEYAKAVEVLNASVKAHIGAAAINGDTKVSKVSVVGVGM 371
           DMIIQNQSV+GKTDFTFTVPR +YAKAV+VLN SVKAHIGAA+I GDTKVSKVSVVGVGM
Sbjct: 301 DMIIQNQSVDGKTDFTFTVPRADYAKAVDVLNDSVKAHIGAASIQGDTKVSKVSVVGVGM 360

Query: 372 RSHVGIASQMFRTLSEEGVNIQMISTSEIKISVLIDEKYMELAVRALHKAFDLDSAK 428
           RSHVGIASQMFRTLSEEG+NIQMISTSEIKISVLIDEKYMELAVRALHK FDL+ + 
Sbjct: 361 RSHVGIASQMFRTLSEEGINIQMISTSEIKISVLIDEKYMELAVRALHKTFDLEKSN 417


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 709,351
Number of extensions: 26360
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 344
Effective length of database: 723,567
Effective search space: 248907048
Effective search space used: 248907048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)