BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1991.p
         (177 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094080|ref|YP_001099155.1| superoxide dismutase (Cu-Zn) [H...    59   1e-10

>gi|134094080|ref|YP_001099155.1| superoxide dismutase (Cu-Zn)
           [Herminiimonas arsenicoxydans]
          Length = 176

 Score = 58.9 bits (141), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 19/143 (13%)

Query: 42  AGEVTISETPYGLLFKPALSGLPAGVHGFHVHQNPSCAPLEKDGKMEPALAAGGHWDPQK 101
           +G V   +    +  + ++ GL  G+HGFHVH+   C+  +       A++AGGH++P  
Sbjct: 42  SGFVHFQQNGDRVTVRASIEGLTPGLHGFHVHEKGDCSAPD-------AMSAGGHFNPG- 93

Query: 102 TGKHEG--PYGEGHLGDLPALYVTADGRADNPVLAPR------LKSIAELRGHALMVHVG 153
             KH G     + H GD   L   A+GRA   ++  +        +   + G  L+VH  
Sbjct: 94  -AKHHGAPTSADHHGGDFGNLTADANGRASLTLVVTKGEITLDRDAANSIIGKGLIVHAD 152

Query: 154 GDNHSDHPATLGGGGARLACGVI 176
            D++   P   G  G RLACGVI
Sbjct: 153 PDDYKTQPT--GNSGKRLACGVI 173


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 400,526
Number of extensions: 18480
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 101
Effective length of database: 749,927
Effective search space: 75742627
Effective search space used: 75742627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)