BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1990.p (697 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 437 e-124 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 418 e-118 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 404 e-113 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 388 e-109 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 365 e-102 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 437 bits (1125), Expect = e-124, Method: Compositional matrix adjust. Identities = 240/583 (41%), Positives = 354/583 (60%), Gaps = 16/583 (2%) Query: 112 ADSDKRSRALDQIEAKLEQQAQILNQMHESVITMD---PAGFITSWNRGAEQLFGYTSLE 168 AD R RA E L+ + + + S+I + P I N E++ GY++ E Sbjct: 368 ADIAARKRA----EYALQLRERAIEASANSIIIISAEAPHYAIEYVNPAFERITGYSAEE 423 Query: 169 AIGRNVLFLYENEEEEDAMHALFLEHGSREIE----VRRRKKSGEVFWASLSLSVMRDQN 224 AIG N+ FL+ + ++ + + S E E +R +K G +FW+ L ++ ++D Sbjct: 424 AIGVNLCFLWGTDVDQPGIEEI-RATASAEREGHAVLRNYRKDGTLFWSDLYIAPVKDDT 482 Query: 225 GHPIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQALTAAQHENLQGC 284 G I DIT K E + DALTGL NR+L+ + QA++ A Sbjct: 483 GTVSHFIVVQYDITATKRYESELEFQTNRDALTGLANRSLMRDRLGQAVSYAHRYGHPIW 542 Query: 285 VMFIDLNRFKPINDTLGHVAGDMLLVEVAIRLRRALREQDVVARLGADEFAVALFDIDKD 344 ++F+DL+RFK +NDTLGH AGD+LL V+ RL+ A+R+ D VAR+G DEF + L + Sbjct: 543 ILFVDLDRFKFVNDTLGHQAGDILLKAVSARLQAAVRDTDTVARMGGDEFVLILPERTDA 602 Query: 345 HHPGYVAQKLLSLFDEPFFIDGHELRVGASIGVSMYPEDASDTETLLRLADIAMYRAKQG 404 + Q+++ +P I+GHE + SIGV++YP D E L++ ADIAMYRAK+ Sbjct: 603 GLSTGIMQRIMESIAQPLTIEGHEFFISGSIGVAVYPADGETPEELIKHADIAMYRAKET 662 Query: 405 GDNNEGGYVYYSEEMNRNTLDLLRIETGLLHAFEYNELLLYYQPKVDMNTLAITGGEALV 464 G NN + +Y+ MN L+ L IE L +A E E L+YQP+VD+ + I G EAL+ Sbjct: 663 GRNN---FQFYTPAMNERALERLHIEGDLRNALEREEFTLHYQPQVDLRSGQIVGVEALI 719 Query: 465 RWQHPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCRQARAWKEAGLAPIRIALNVTAR 524 RWQHPE G++ P FI +AEE GLIV + WV+ C Q + W+E+G +R+++N++AR Sbjct: 720 RWQHPELGMVPPVRFIGLAEENGLIVPIGAWVIRTACLQNKVWQESGFGHLRMSVNLSAR 779 Query: 525 EFTRS-LPDRVRAALNRHALSGDWLEIEITESMLMHSTDRVISIMEKICSLGITISLDDF 583 +F + L D + +L L+ ++LEIE+TES++M DR I I+ ++ +LG+ +S+DDF Sbjct: 780 QFAQEDLVDSIAVSLREANLAPEYLEIELTESLVMADVDRAIGILRELKALGVQLSIDDF 839 Query: 584 GTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIASAIIGIAKQLRHKVIAEGVETE 643 GTGYSSLSYLKRFPI+ LKIDRSF I D +D AI +++I +A LR VIAEGVETE Sbjct: 840 GTGYSSLSYLKRFPIDVLKIDRSFVNDITIDPDDAAIVASVISLAHSLRLDVIAEGVETE 899 Query: 644 KQFNFLREAGCNELQGFLFSCPVPADDFHAMLLEGRKLNLAPT 686 +Q +LRE C+++QG+ FS PV A+ F ML +G++L + T Sbjct: 900 EQLTYLREHNCDQIQGYFFSRPVTAEAFSVMLKDGKRLQIETT 942 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/543 (41%), Positives = 329/543 (60%), Gaps = 8/543 (1%) Query: 142 VITMDPAGFITSWNRGAEQLFGYTSLEAIGRNVLFLY---ENEEEEDAMHALFLEHGSRE 198 V T P + N E + GY+S EAIGRN FL ++ E + A E Sbjct: 276 VDTATPGMPLIYVNGAFETITGYSSEEAIGRNCKFLQGMDTDQPELGKLRAAIREQRPAS 335 Query: 199 IEVRRRKKSGEVFWASLSLSVMRDQNGHPIG-LIGYLNDITERKNAEKLIHHLAYYDALT 257 + +R K G +F L ++ + D +G +G +G L D+T+ K ++ + H A YD LT Sbjct: 336 VLLRNYHKDGSMFLNELYIAPVSDTSGGAVGHFVGVLYDVTQIKRYQEDLEHQANYDTLT 395 Query: 258 GLPNRTLLTRTVDQALTAAQHENLQGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAIRLR 317 GL NR LL QAL A+ + ++FIDL+ FK +ND++GH AGD L+ V RL+ Sbjct: 396 GLANRNLLNERTQQALLQARRHDHFLSLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQ 455 Query: 318 RALREQDVVARLGADEFAVALFDIDKDHHPGYVAQKLLSLFDEPFFIDGHELRVGASIGV 377 +R+ D VAR+G DEF + L + V Q++ + +P +I G E+ V S+GV Sbjct: 456 TCVRDGDTVARIGGDEFVLLLTNQSVSDSNAGVMQRIQAELIKPMWIRGQEIVVTCSMGV 515 Query: 378 SMYPEDASDTETLLRLADIAMYRAKQGGDNNEGGYVYYSEEMNRNTLDLLRIETGLLHAF 437 + +PED D+E+LL AD AMYRAK G NN + +Y++EMN + + L +E+ L HA Sbjct: 516 ARFPEDGEDSESLLANADTAMYRAKSSGRNN---FQFYTKEMNATSGERLSLESDLWHAL 572 Query: 438 EYNELLLYYQPKVDMNTLAITGGEALVRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVL 497 + +EL L YQP++D+ + G EAL+RWQHP+RGL+ P +FIP+AE GLI+ + WVL Sbjct: 573 KNDELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLIIPIGIWVL 632 Query: 498 DAVCRQARAWKEAGLAPIRIALNVTAREFT-RSLPDRVRAALNRHALSGDWLEIEITESM 556 + CR ++ GL PIR+A+N++AR+ + R+ + V++ + L +LE+E+TESM Sbjct: 633 ETACRHNLQLQKEGLPPIRVAINLSARQLSDRNFVESVQSVIEAIGLDPHYLELEVTESM 692 Query: 557 LMHSTDRVISIMEKICSLGITISLDDFGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTN 616 +MH+ + V+ + + +GI +SLDDFGTG+SSL+YLKRFPI+ LKID+SF D Sbjct: 693 VMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFIFNCDSDPG 752 Query: 617 DCAIASAIIGIAKQLRHKVIAEGVETEKQFNFLREAGCNELQGFLFSCPVPADDFHAMLL 676 D IA II +A L+ KVIAEGVE + +FL++ GC+E QG+ S P+ DD LL Sbjct: 753 DAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRPLTFDDLRMFLL 812 Query: 677 EGR 679 G+ Sbjct: 813 TGK 815 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 404 bits (1037), Expect = e-113, Method: Compositional matrix adjust. Identities = 231/559 (41%), Positives = 329/559 (58%), Gaps = 10/559 (1%) Query: 123 QIEAKLEQQAQILNQMHESVITMDPAGFITSWNRGAEQLFGYTSLEAIGRNVLFLYENEE 182 Q E + + +Q + Q ++I D G I N GY + IG+ ++++ + Sbjct: 301 QSEVFMRKLSQAVEQSSNAIIITDLNGTIEYANTTFSTNTGYALHDIIGKKP-NMHKSGK 359 Query: 183 EEDAMHALFLEHGSR----EIEVRRRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDIT 238 A +A H R + E R+ +GE + +S +R+ +G + DIT Sbjct: 360 TSRATYADMWAHLGRGESWQGEFINRRHNGEERIDLVRVSPVREADGRITHYLAIEEDIT 419 Query: 239 ERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQALTAAQHENLQGCVMFIDLNRFKPIND 298 +KNA+ I LA++D LTGLPNR LL +AL A+ + VMF+DL+ FK IND Sbjct: 420 NQKNAQARIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKNIND 479 Query: 299 TLGHVAGDMLLVEVAIRLRRALREQDVVARLGADEFAVALFDIDKDHHPGYVAQKLLSLF 358 TLGH GD LLVE+A RLR LR D ++RLG DEF + L +++ +AQ+L+ Sbjct: 480 TLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRES-AKKIAQELMRAI 538 Query: 359 DEPFFIDGHELRVGASIGVSMYPEDASDTETLLRLADIAMYRAKQGGDNNEGGYVYYSEE 418 +EP+ I HEL V ASIG+++YP D D ETL + AD+AMYRAKQ G N Y +++E Sbjct: 539 NEPYRIGSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRN---AYRSFTQE 595 Query: 419 MNRNTLDLLRIETGLLHAFEYNELLLYYQPKVDMNTLAITGGEALVRWQHPERGLLLPGE 478 M + L++ L A +L ++YQP++ + + + G EAL+RW HPE G + P E Sbjct: 596 MQAYSTRYLQVLNALRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNISPAE 655 Query: 479 FIPIAEETGLIVQLSDWVLDAVCRQARAWKEAGLAPIRIALNVTAREFTRS-LPDRVRAA 537 FIPIAEE+GLI+Q+ +WVL QA+ W + GL + IA+N++A +F + LP+ V Sbjct: 656 FIPIAEESGLILQIGEWVLRVAVAQAKKWHQLGLDKLIIAVNLSAVQFRHAGLPNLVMQI 715 Query: 538 LNRHALSGDWLEIEITESMLMHSTDRVISIMEKICSLGITISLDDFGTGYSSLSYLKRFP 597 L +LE+E+TE + MH I++M + G+ +S+DDFGTGYSSLSYLK+F Sbjct: 716 LKEEDFPPQYLELELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLKQFK 775 Query: 598 INTLKIDRSFTMGIPDDTNDCAIASAIIGIAKQLRHKVIAEGVETEKQFNFLREAGCNEL 657 LKID+SF I D D AI SAIIG+AK L + IAEGVET +Q FLRE GC+E Sbjct: 776 AYKLKIDQSFVRDISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHEA 835 Query: 658 QGFLFSCPVPADDFHAMLL 676 QG+ +S P+PA DF +L Sbjct: 836 QGYHYSKPLPAADFETFIL 854 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 388 bits (997), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/479 (43%), Positives = 295/479 (61%), Gaps = 7/479 (1%) Query: 199 IEVRRRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLAYYDALTG 258 E R K +G++ W S + + G + G + ITERK E I A +DALTG Sbjct: 235 FESRIYKSNGDIIWISENARAVHTSTGELLFFEGTVEAITERKLHEAEIQFQATHDALTG 294 Query: 259 LPNRTLLTRTVDQA-LTAAQHENLQGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAIRLR 317 LPNRTLL + QA L +A++ NL + F+DL++FK IND+LGH GD LL A RL Sbjct: 295 LPNRTLLYDRMQQAVLHSARYGNLTA-IAFLDLDQFKFINDSLGHQVGDELLKITAQRLT 353 Query: 318 RALREQDVVARLGADEFAVALFDIDKDHHPGYVAQKLLSLFDEPFFIDGHELRVGASIGV 377 LRE D VAR G DEF + L + + Q++L +P+ +G E R+ S+GV Sbjct: 354 SCLRESDTVARQGGDEFVLLLTSQPSEESITHTMQRVLHEVAQPWMANGLEFRITCSVGV 413 Query: 378 SMYPEDASDTETLLRLADIAMYRAKQGGDNNEGGYVYYSEEMNRNTLDLLRIETGLLHAF 437 ++ P+D D ETLL+ AD AMY+AK+ G NN + Y++ EMN D L + L A Sbjct: 414 TLCPDDGRDAETLLKNADSAMYKAKELGRNN---FQYFATEMNDTATDRLALLNRLRQAI 470 Query: 438 EYNELLLYYQPKVDMNTLAITGGEALVRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVL 497 +E +L+YQPK+++ I G EAL+RW E G++ PG FIP+AEETGLI+ + WVL Sbjct: 471 PNHEFVLHYQPKINLANGDIIGAEALIRWNSAE-GMVSPGSFIPLAEETGLIIPIGVWVL 529 Query: 498 DAVCRQARAWKEAGLAPIRIALNVTAREFTR-SLPDRVRAALNRHALSGDWLEIEITESM 556 + CRQ RAW+ AG API I++N+++R+ R + ++V L L +LE+EITES+ Sbjct: 530 ETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQVEQVLAETGLEAQYLELEITESV 589 Query: 557 LMHSTDRVISIMEKICSLGITISLDDFGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTN 616 + ++ +++ ++ LG+ ISLDDFGTGYSSLSYLKRFP++TLKID+SF + + Sbjct: 590 MASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDLATSQD 649 Query: 617 DCAIASAIIGIAKQLRHKVIAEGVETEKQFNFLREAGCNELQGFLFSCPVPADDFHAML 675 AI AII + L V+AEG+ETE+QF FL ++ CNE QG+L S PV F +L Sbjct: 650 SAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACNEGQGYLMSRPVSHQHFELLL 708 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/422 (45%), Positives = 264/422 (62%), Gaps = 5/422 (1%) Query: 251 AYYDALTGLPNRTLLTRTVDQALTAAQHENLQGCVMFIDLNRFKPINDTLGHVAGDMLLV 310 A D LT LPNRTLL ++Q L A+ + + +MFIDL+ FK IND+LGH GDMLL+ Sbjct: 267 ALQDNLTKLPNRTLLEDRLNQILHKAERTHTRFALMFIDLDGFKAINDSLGHHIGDMLLI 326 Query: 311 EVAIRLRRALREQDVVARLGADEFAVALFDIDKDHHPGYVAQKLLSLFDEPFFIDGHELR 370 EVA R+R ++R QD ARLG DEF V L ++ + VA KL ++ ++PF ID H L Sbjct: 327 EVAQRIRGSIRAQDTAARLGGDEF-VLLIEVTEPEDAASVADKLCNIINQPFEIDFHTLG 385 Query: 371 VGASIGVSMYPEDASDTETLLRLADIAMYRAKQGGDNNEGGYVYYSEEMNRNTLDLLRIE 430 V AS+G+++YP+D LL AD AMY K G N GY ++ MN N + L++ Sbjct: 386 VSASVGITIYPDDGHTPHDLLVNADAAMYHTKSTGRN---GYHFFEASMNANAHNQLQVI 442 Query: 431 TGLLHAFEYNELLLYYQPKVDMNTLAITGGEALVRWQHPERGLLLPGEFIPIAEETGLIV 490 L A E E L+YQPK + + G EAL+RWQHP RG++ P +FI +AE+TGLIV Sbjct: 443 QDLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAEKTGLIV 502 Query: 491 QLSDWVLDAVCRQARAWKEAGLAPIRIALNVTAREFTRS-LPDRVRAALNRHALSGDWLE 549 + +WVLD CRQ R W + G ++A+N++A +F+ L + V+ L R+ L Sbjct: 503 PIGEWVLDEACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLARNNFPASGLI 562 Query: 550 IEITESMLMHSTDRVISIMEKICSLGITISLDDFGTGYSSLSYLKRFPINTLKIDRSFTM 609 +E+TES MH + ++I++K+ LGI IS+DDFGTGYSSL YLKR P LKIDR F Sbjct: 563 LEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELKIDRGFIR 622 Query: 610 GIPDDTNDCAIASAIIGIAKQLRHKVIAEGVETEKQFNFLREAGCNELQGFLFSCPVPAD 669 + +ND +I +AII + + L ++AEGVETE+Q +LR GC+ +QG+L P+ D Sbjct: 623 DLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLMGRPMAPD 682 Query: 670 DF 671 F Sbjct: 683 QF 684 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,368,262 Number of extensions: 58467 Number of successful extensions: 264 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 33 Length of query: 697 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 609 Effective length of database: 710,387 Effective search space: 432625683 Effective search space used: 432625683 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)