BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1989.p
         (399 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095319|ref|YP_001100394.1| EAL domain-containing protein [...   140   1e-34
gi|134094534|ref|YP_001099609.1| hypothetical protein HEAR1309 [...   120   9e-29

>gi|134095319|ref|YP_001100394.1| EAL domain-containing protein
           [Herminiimonas arsenicoxydans]
          Length = 425

 Score =  140 bits (352), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 158/314 (50%), Gaps = 13/314 (4%)

Query: 55  ALGGLNCIIPVRDPAIFAPEFAQEIPQGQLALRVPVEHCVDPAKIDALDWLYSRGFAIIA 114
           +LG  N      D A+   +F   +P  ++ L +     V P  +  +  L ++GF    
Sbjct: 77  SLGFFNV-----DAAVLMRDFVNFLPCEKVVLEILETVEVTPELVARVAELSAQGFTFAL 131

Query: 115 DGLPAQGASV---FPFVESMALDVS---MGHVPETTQWLHRLRGPHLAENVGDAVQFDAC 168
           D + +   ++    P V+ + +D++      + +   +  R     LAE V    QF  C
Sbjct: 132 DDVISHTEALQKLLPLVKIIKIDITGMTKAEIAKLVDYFRRDDKLLLAEKVETIEQFQDC 191

Query: 169 RVEGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANALESLLKQDPALSYQ 228
              GF +F G Y   P     +K + S+  +++L+ L+  DAD   +E+++K+D +L   
Sbjct: 192 MDLGFHYFQGYYFARPVILSGKKLAPSQLAVMQLMALIMADADTADIEAIIKKDASLVLT 251

Query: 229 LFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYAR-FPGDESANPLLPRAAAR 287
           L +L ++   G +  I + +QA+ +LGRRQLQRWLQ++LYA    G +  +PLL  A  R
Sbjct: 252 LLRLTNTPGLGVTRRIDSLSQALTVLGRRQLQRWLQIILYAEHHKGSQFNSPLLQLATTR 311

Query: 288 AAMMEAMAHKVQCTQEEL-DRAFITGMFSLLDILLGMPLHDIIEPLKLPVDIVNALVRRT 346
             ++E +  K++  Q  + D AF  G+ SL+D L G  +  I+E + +  D+ +AL+ R 
Sbjct: 312 GKLLELITEKLRPGQRAMADTAFTVGIMSLMDTLFGQSMQQILEQVAVVDDVSSALLARR 371

Query: 347 GRLGKLLDVVERSE 360
           G  G LL + E  E
Sbjct: 372 GFYGDLLKLAEYIE 385


>gi|134094534|ref|YP_001099609.1| hypothetical protein HEAR1309
           [Herminiimonas arsenicoxydans]
          Length = 402

 Score =  120 bits (302), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 142/298 (47%), Gaps = 8/298 (2%)

Query: 68  PAIFAPEFAQEIPQGQLALRVPVEHCVDPAKIDALDWLYSRGFAIIADGLPAQG--ASVF 125
           PA+ A    Q +P      R+      D     A+  L  +G+     G  A    + + 
Sbjct: 72  PALIASNVVQTLPAKNTVFRLTAADLTDADTHQAVTALRQQGYGFSLCGADAVAPDSPLL 131

Query: 126 PFVESMALDVSMGHVPETTQWLHRLRGP-HLAENVGDAVQFDACRVEGFRWFSGDYALHP 184
             V  + +    G   +T  +      P  +  ++ D  ++D C   G + F G   L P
Sbjct: 132 ALVSHVEVSFGSGIENDTATFGEAHASPIKVVRHLADWQEYDHCAAAGLQAFIGKLYLTP 191

Query: 185 DSRLSQKNSISRARLL--KLLELVARDADANALESLLKQDPALSYQLFKLVSSAAFGFSA 242
               ++K  ++ A+L+  +L+++V ++AD   LE++LK+D  L+Y+LF+ +++  FG  A
Sbjct: 192 RPE-AEKKGLNSAQLIIVQLMQMVRQNADVRELENVLKRDATLAYKLFRYINNVGFGLGA 250

Query: 243 HITNFTQAINLLGRRQLQRWLQLLLYARFPGDESANPLLPRAAARAAMMEAMAHKVQCTQ 302
            I +   A+ +LG   L RWL LLL     G +SA  L+  A  R    E   H +   +
Sbjct: 251 EIQSLRHAVTMLGYSPLYRWLSLLLATAGTGSDSA-VLMQTAIVRGRFAELAGHGI-LPK 308

Query: 303 EELDRAFITGMFSLLDILLGMPLHDIIEPLKLPVDIVNALVRRTGRLGKLLDVVERSE 360
            E +  F+ G+FS+LD LLG+P+ +++  ++L   +  AL+ R G  G  L + E  E
Sbjct: 309 NEAENLFVVGIFSMLDRLLGIPMEEVLGKIQLSEPVAQALLTRDGMYGPFLALAEACE 366


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 726,838
Number of extensions: 28501
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 315
Effective length of database: 723,567
Effective search space: 227923605
Effective search space used: 227923605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)