BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1988.p (417 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095309|ref|YP_001100384.1| coproporphyrinogen III oxidase ... 679 0.0 gi|134094857|ref|YP_001099932.1| coproporphyrinogen dehydrogenas... 120 1e-28 gi|134094858|ref|YP_001099933.1| coproporphyrinogen dehydrogenas... 104 1e-23 >gi|134095309|ref|YP_001100384.1| coproporphyrinogen III oxidase [Herminiimonas arsenicoxydans] Length = 414 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/417 (76%), Positives = 368/417 (88%), Gaps = 5/417 (1%) Query: 1 MIPIKPI-NPAMAELPATQAATGPAQAALAFLKPGSLQLAALPPLSLYVHFPWCVRKCPY 59 MIPIKPI N A L +Q PA+AA A+L+PG+L L ALPPLSLYVHFPWCV+KCPY Sbjct: 1 MIPIKPIGNDAAFNLDHSQ----PARAATAYLQPGALNLTALPPLSLYVHFPWCVKKCPY 56 Query: 60 CDFNSHEVKGSFPEDDYLAALRSDLEQSLPLIWGRKIHTIFIGGGTPSLLSAAGLDRLLS 119 CDFNSHE G FPED+YL+ALR+DLEQ+LPLIWGRKI+TIFIGGGTPSLLSA GLDRLLS Sbjct: 57 CDFNSHEATGGFPEDEYLSALRADLEQALPLIWGRKIYTIFIGGGTPSLLSAKGLDRLLS 116 Query: 120 DLRTLLPFDSDIEITMEANPGTFEADKFRSYRASGINRLSIGIQSFNSQHLHALGRIHDG 179 D+RTLLP D +EITMEANPGTFEA+KF+SYR+SG+NRLSIGIQSFN++HL ALGRIHDG Sbjct: 117 DIRTLLPLDGAVEITMEANPGTFEAEKFKSYRSSGVNRLSIGIQSFNARHLQALGRIHDG 176 Query: 180 DQARKAVEIAHANFDNFNLDLMYALPQQTLAEAQADISTAIAFAPPHLSLYHLTLEPNTL 239 D+AR+AV+IA ANF+NFNLDLMYALP QTL EA+ D+ TAIAFAPPHLSLYHLT+EPNT+ Sbjct: 177 DEARRAVDIAMANFENFNLDLMYALPSQTLEEARQDVQTAIAFAPPHLSLYHLTMEPNTV 236 Query: 240 FAKYPPPVPDEDASADMQDMIAELTTAAGYTNYEVSAYAQPKRRARHNLNYWQFGDYLGI 299 FAKYPP VPD+DASADMQDMIAE TTAAGY +YEVSAYAQPKR+ARHNLNYWQFGDYLGI Sbjct: 237 FAKYPPVVPDDDASADMQDMIAEETTAAGYQHYEVSAYAQPKRQARHNLNYWQFGDYLGI 296 Query: 300 GAGAHSKLSFPHRIVRQMRYKHPQAYLDQARVGSPIQEEGEIGRDALGFEFMLNALRLTE 359 GAGAH+KLSFPHR++RQ RYK P++Y++Q R+G+PIQEE EI R LGFEFMLNA+RLT Sbjct: 297 GAGAHTKLSFPHRVIRQARYKQPKSYMEQMRLGNPIQEETEISRSELGFEFMLNAMRLTN 356 Query: 360 GFPPNLFAERTGMSLNQIEQQLNLAEQKGMLYRDHALIRPTELGRRFLNDLQEIFLS 416 G NLFA+RTGM LN IE+ L AE KG+LYRDH I+PTELG+RFLNDLQ++FL+ Sbjct: 357 GVEVNLFADRTGMPLNAIERALRAAEDKGLLYRDHKTIKPTELGQRFLNDLQQMFLA 413 >gi|134094857|ref|YP_001099932.1| coproporphyrinogen dehydrogenase [Herminiimonas arsenicoxydans] Length = 465 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 7/245 (2%) Query: 43 PLSLYVHFPWCVRKCPYCDFNSHEVKGSFPEDDYLAALRSDLEQSLPLIWG-RKIHTIFI 101 PLSLYVH P+C C YC N + YL+ L+ ++E L G +I + I Sbjct: 44 PLSLYVHIPFCESVCHYCSCNKVVTRDRSKAATYLSYLKHEIEMQGNLFAGMNQIEKLHI 103 Query: 102 GGGTPSLLSAAGLDRLLSDLRTLLPFDSDI--EITMEANPGTFEADKFRSYRASGINRLS 159 GGGTP+ L+ A + L++ LR F SD E +E +P T ++ + R G NR+S Sbjct: 104 GGGTPTYLNDAQMGELMAHLRRHFRFASDFDGEYAIEVDPRTVTVERIHALRKQGFNRIS 163 Query: 160 IGIQSFNSQHLHALGRIHDGDQARKAVEIA-HANFDNFNLDLMYALPQQTLAEAQADIST 218 IG+Q F+ A+ RI + A A F + ++DL+Y LP+Q + ++ Sbjct: 164 IGVQDFDPDVQQAVNRIQSEQDTLNIIRAAREACFRSVSIDLIYGLPKQNVITMAQTLNK 223 Query: 219 AIAFAPPHLSLYHLTLEPNTLFAKY---PPPVPDEDASADMQDMIAELTTAAGYTNYEVS 275 I +P +++Y+ PN + +P DA +M + T AGY + Sbjct: 224 VINASPDRIAVYNYVHRPNMFKPQRRIDEDDLPSLDARLNMFSLCIRRLTDAGYVYIGMD 283 Query: 276 AYAQP 280 +A+P Sbjct: 284 HFAKP 288 >gi|134094858|ref|YP_001099933.1| coproporphyrinogen dehydrogenase [Herminiimonas arsenicoxydans] Length = 476 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 23/285 (8%) Query: 44 LSLYVHFPWCVRKCPYCDFNSHEVKGSFPEDDYLAALRSDLEQSLPLIWG-RKIHTIFIG 102 LSLY+H P+C C YC N + YL L+ ++ L G +I + G Sbjct: 65 LSLYLHIPFCNTVCYYCGCNKIVTRDRSKAVTYLDYLKREVAMQGRLFAGMNQIEQLHFG 124 Query: 103 GGTPSLLSAAGLDRLLSDLRTLLPFDSDI--EITMEANPGTFEADKFRSYRASGINRLSI 160 GGTP+ LS +D L++ LR F D E ++E +P T ++ + R G NRLS+ Sbjct: 125 GGTPTYLSDEQMDDLMAHLRRWFTFAPDAVGEYSIEIDPRTVSRERIHTLRRQGFNRLSL 184 Query: 161 GIQSFNSQHLHALGRIHDGDQARKAV-EIAHANFDNFNLDLMYALPQQTLAEAQADISTA 219 G+Q F+ A+ RI Q + A+F + ++DL+Y LP+QTL + Sbjct: 185 GVQDFDPVVQKAVNRIQPEQQTLDIIAAARAADFRSVSVDLIYGLPKQTLTTIGQTLDKV 244 Query: 220 IAFAPPHLSLYHLT-----LEPNTLFAKYPPPVPDEDASADMQDMIAELTTAAGYTNYEV 274 IA P +++Y+ +P A+ +PD D +M + A Y + Sbjct: 245 IAADPDRIAIYNYAHMPHLFKPQRRIAE--EDLPDADTKLEMLFLCIRRLNEAAYIYIGM 302 Query: 275 SAYAQP-------KRRARHNLNYWQF-----GDYLGIGAGAHSKL 307 +A+P +R R + N+ + D + G A S + Sbjct: 303 DHFAKPGDDLAVAQREGRLHRNFQGYSTHAEADLVSCGVSAISAI 347 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 738,980 Number of extensions: 28790 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 3 Length of query: 417 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 333 Effective length of database: 723,567 Effective search space: 240947811 Effective search space used: 240947811 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)