BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1987.p
         (196 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095310|ref|YP_001100385.1| putative HAM1 nucleoside-tripho...   316   5e-88

>gi|134095310|ref|YP_001100385.1| putative HAM1
           nucleoside-triphosphate diphosphatase [Herminiimonas
           arsenicoxydans]
          Length = 194

 Score =  316 bits (809), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 148/192 (77%), Positives = 169/192 (88%)

Query: 5   QKIVMASNNAGKLKEFASLLGDIGLDVRPQGEFNVPEAEEPFATFVENALTKARHAARLT 64
           + +++ASNNAGKLKEF++LL  I  D+  Q EFNVPEAEEP  TFVENA+ KARHAARLT
Sbjct: 3   RTLILASNNAGKLKEFSALLAPINFDLHTQSEFNVPEAEEPHVTFVENAIAKARHAARLT 62

Query: 65  GLPALADDSGVCVNALGGAPGVYSARYAGEPKSDANNNAKLVAELAPHADKSAYYYCVLV 124
           G PALADDSGVCVNALGGAPGVYSARYAGEPKSD  NN KL+A+LA HADKSAYYYCVLV
Sbjct: 63  GKPALADDSGVCVNALGGAPGVYSARYAGEPKSDQRNNEKLIADLAAHADKSAYYYCVLV 122

Query: 125 YVRHADDPQPVIADGLWKGEIMAQPRGEGGFGYDPHFLLPALGKTAAELTAAEKNAVSHR 184
           +VRHADDPQPVIADG W GE++A+PRG+GGFGYDP+F +P L KTAAELT+ EKN +SHR
Sbjct: 123 FVRHADDPQPVIADGRWNGEMLAEPRGQGGFGYDPYFWIPELQKTAAELTSEEKNRLSHR 182

Query: 185 GQALRALVEKLK 196
           GQALRAL+EKL+
Sbjct: 183 GQALRALIEKLR 194


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 407,433
Number of extensions: 17719
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 119
Effective length of database: 746,632
Effective search space: 88849208
Effective search space used: 88849208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)