BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1986.p
         (242 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas arsenic...   399   e-113

>gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas
           arsenicoxydans]
          Length = 244

 Score =  399 bits (1025), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/242 (78%), Positives = 215/242 (88%)

Query: 1   MTTFHRPSGRSVSQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60
           M+  +RPSGR+   LR ++  R YTKHAEGSVL+E GDT+V+CTASIE++VPGFLKGKGQ
Sbjct: 1   MSYENRPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQ 60

Query: 61  GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120
           GWLTAEYGMLPRSTHTRMDREAA+GKQSGRTQEIQRLIGR+LRAAFDL+AFGERTL LDC
Sbjct: 61  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120

Query: 121 DVLQADGGTRTAAITGAMVAAYDAFTVLQSRGLIETIPVKQFVAAISVGVYQGVPVLDLD 180
           DV+QADGGTRTAAITG MVAAYDAF+ L ++ +I  IP+K FVAAISVGVY+G PVLDLD
Sbjct: 121 DVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLD 180

Query: 181 YLEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNSLLDLAQQGIATLNGLQKQAL 240
           Y EDSDCDTDMN+VMTDAGHF+EVQGTAEGAAFDRAT++ LLDLAQ GI  L  +QKQAL
Sbjct: 181 YDEDSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQAL 240

Query: 241 GL 242
            +
Sbjct: 241 AI 242


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 443,592
Number of extensions: 17869
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 163
Effective length of database: 740,042
Effective search space: 120626846
Effective search space used: 120626846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)