BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1985.p
         (304 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095314|ref|YP_001100389.1| hypothetical protein HEAR2129 [...   436   e-124

>gi|134095314|ref|YP_001100389.1| hypothetical protein HEAR2129
           [Herminiimonas arsenicoxydans]
          Length = 300

 Score =  436 bits (1120), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/300 (73%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 6   MTGYAVTTRETTAGTVTLEMKSVNSRFLDLQFRVNDDLRAVEPMLREAIMGRLVRGKVEC 65
           MTGYAVTT ET+ GT+T+E+KSVNSRFLDLQFR+NDDLRA+EP LREAIM R+ RGKVEC
Sbjct: 1   MTGYAVTTHETSNGTLTIEIKSVNSRFLDLQFRINDDLRALEPSLREAIMARVTRGKVEC 60

Query: 66  RLSFGRKVASGNSQAINTSLVAQLASLQDQLRAQFPDAAPLSINELLRWPGVMEEAEISQ 125
           RLSFGRKVA+  +QA+N + +  LA+LQ  LR QF DAAPLS+ ELLRWPGV+EEAE+SQ
Sbjct: 61  RLSFGRKVATDTTQALNATALNALAALQTDLRRQFTDAAPLSVGELLRWPGVIEEAEMSQ 120

Query: 126 ETLQADILSTLQQTLDAFVESRAREGSALQAVILARVDAMEAIVARITPLVPQLVEQFQQ 185
           +TLQAD+++ +Q T+ AFVESRAREG+ALQ ++LARV  ME IV RI PL+PQ++ QFQQ
Sbjct: 121 DTLQADVIAAMQTTMTAFVESRAREGNALQTMLLARVSDMEEIVLRIAPLIPQVIAQFQQ 180

Query: 186 KAIERMTEALGLALQTQNGAAPVA-TREESLERIRQEVTLYGIRIDIAEELARLSAHLAE 244
           KA +RM EALGLA++  +  A  A +REE+L+RIRQEVTLYGIR+D+AEEL RLSAHL E
Sbjct: 181 KATDRMQEALGLAVRNGDANAQSAISREEALDRIRQEVTLYGIRVDVAEELTRLSAHLGE 240

Query: 245 TRHILKKGGQVGKRLDFMMQELNREANTVGSKAAVKELADASMELKLLIDQMREQVQNLE 304
           TR IL+KGGQVGKRLDFMMQELNREANTVGSKAA+KEL+DASM +KLLI+QMREQVQNLE
Sbjct: 241 TRVILEKGGQVGKRLDFMMQELNREANTVGSKAALKELSDASMAMKLLIEQMREQVQNLE 300


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.130    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 445,575
Number of extensions: 16156
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 223
Effective length of database: 733,452
Effective search space: 163559796
Effective search space used: 163559796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)