BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1981.p (323 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 189 2e-49 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 151 4e-38 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 147 6e-37 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 139 2e-34 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 113 1e-26 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 189 bits (480), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/279 (37%), Positives = 152/279 (54%) Query: 10 FVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAAGREFFERC 69 FV VV A SF AAG RL + +S+ + LE +G RLL R+TR+L++T +G ++ERC Sbjct: 4 FVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYYERC 63 Query: 70 APGLEDIEHASTSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYPKVQLEFVLND 129 L D++ A +S P G+L+VA PV F + E+MR YP+V+L+ L D Sbjct: 64 LQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIALAD 123 Query: 130 GRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLEREGSPQTLADLVGHAC 189 R DLI +G DLA R G LP+S L+ARKL + L ASP YL+ G+PQT DL HAC Sbjct: 124 RRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQHAC 183 Query: 190 LATSQAPQHTVWKLEGPHGPQSVRVAPRLCINTAQGQLRAARAGLGIALLPTMLASEDLR 249 L S + W +VRV + N AA G G+ P + ++D++ Sbjct: 184 LNYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIVADDVQ 243 Query: 250 NGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFF 288 G LV ++ D +G YA+Y R+ L + V +++ Sbjct: 244 AGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 151 bits (382), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 147/294 (50%), Gaps = 4/294 (1%) Query: 2 LDLN--DIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMT 59 +D+N D+ FV V+ +G+ AA + L + +SR L LE + LL R+TR++ +T Sbjct: 1 MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60 Query: 60 AAGREFFERCAPGLEDIEHASTSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYP 119 GR F ++ L ++ A ++ + +P+G LR+ A F + + + EF LYP Sbjct: 61 DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120 Query: 120 KVQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLEREGSPQ 179 ++ LE ND ADL+ D+A R G L DS+L AR L + L L+ASP YL+R G P Sbjct: 121 QITLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPT 180 Query: 180 TLADLVGHACLATSQAPQHTVWKLEGPHGPQSVRVAPRLCINTAQGQLRAARAGLGIALL 239 T L GH L Q W + G + + V P L ++ + A G GIA L Sbjct: 181 TPEQLAGHQLLGFLQFESGNTWPIRHA-GGEGLTVTPALFASSGETLRALALHGQGIASL 239 Query: 240 PTMLASEDLRNGTLVNILPDYQRDT-MGFYAVYVHRRQLPSAVSALIEFFADKL 292 + +D+ G LV IL +Y +AVY QL +S +EF KL Sbjct: 240 ADYMTRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 147 bits (372), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 136/286 (47%), Gaps = 1/286 (0%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 M L I FV V SFAAA L + P + RR+ +LE +GVRLL RSTR+L +T Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 AGREFFERCAPGLEDIEHASTSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYPK 120 G + E C L +++ A ++L+ + +G L ++AP F + F+ +P Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLEREGSPQT 180 +++ F L D DL+ EG D+ R G D + VA KL + + +P Y ++ G P+T Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKT 180 Query: 181 LADLVGHACLATS-QAPQHTVWKLEGPHGPQSVRVAPRLCINTAQGQLRAARAGLGIALL 239 L DL H CLA + Q Q W SVR L N + R GLGIA Sbjct: 181 LDDLAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAWR 240 Query: 240 PTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALI 285 L +GTL +L D+ AVY +R +P+ V I Sbjct: 241 SVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFI 286 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 146/301 (48%), Gaps = 1/301 (0%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 M ++D+ F +V+ GS AAA + L + P ++S+RL +EA + VRLL R+TR++++T Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 61 AGREFFERCAPGLEDIEHASTSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYPK 120 G + A + ++E ++ G L+++A F + F RLYP+ Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLEREGSPQT 180 V ++ L D +L+ +G D R G LPD+ L ARK+ + + ASP YL+ G P T Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLT 180 Query: 181 LADLVGHACLATSQAPQ-HTVWKLEGPHGPQSVRVAPRLCINTAQGQLRAARAGLGIALL 239 DL H C+ ++ + + W ++V+V L N + A G GI + Sbjct: 181 PRDLQKHNCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVVR 240 Query: 240 PTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGIADK 299 + LR+G L +L D+Q Y V+ + L + AL++F E D+ Sbjct: 241 SEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFESHRTDR 300 Query: 300 G 300 G Sbjct: 301 G 301 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 125/279 (44%), Gaps = 1/279 (0%) Query: 9 LFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAAGREFFER 68 +F + SF A RL P ++R +Q LE G L RSTRQ+ +TA G ++ Sbjct: 10 IFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFGEGLLDQ 69 Query: 69 CAPGLEDIEHA-STSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYPKVQLEFVL 127 P LE E T ++ Q +G++R+ AP + + +P + L+ L Sbjct: 70 VRPALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVAARHPDITLDVRL 129 Query: 128 NDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLEREGSPQTLADLVGH 187 +D ++ + EGID+ R G + DS VARK L ++A+PR +++ G P+ + L Sbjct: 130 SDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAAPRLIKKVGVPENIDALSSL 189 Query: 188 ACLATSQAPQHTVWKLEGPHGPQSVRVAPRLCINTAQGQLRAARAGLGIALLPTMLASED 247 W G Q AP L + A ++ AA AG+ A L +A+ Sbjct: 190 PATVALDINTGRPWPWHFKAGRQWTPAAPTLVADNADMEMGAALAGIAFAQLADYMAAPY 249 Query: 248 LRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIE 286 + +G LV +L + G Y R +P V A+ + Sbjct: 250 IASGKLVRVLESEEPPAWGLYVYRPQRGPIPGRVRAVFD 288 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 561,075 Number of extensions: 21059 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 9 Length of query: 323 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 241 Effective length of database: 730,157 Effective search space: 175967837 Effective search space used: 175967837 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)