BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1979.p
         (446 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095229|ref|YP_001100304.1| hypothetical protein HEAR2037 [...   219   2e-58

>gi|134095229|ref|YP_001100304.1| hypothetical protein HEAR2037
           [Herminiimonas arsenicoxydans]
          Length = 444

 Score =  219 bits (559), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 226/446 (50%), Gaps = 31/446 (6%)

Query: 2   SIVFASLNHPQRVVLAAEVHSRPFLQLTRSETLTHLAVYVREEGNGARHASAQHALLDEL 61
           + V+    +  R     EVH+RP L +     +  LA     EG+ A+   A    + EL
Sbjct: 18  ATVYGMPAYTDRAAAVGEVHARPHLLIQAPRGILQLAFMT--EGDQAKDQMA----MSEL 71

Query: 62  CAHFGVVAPGGEAKHFYHDFGRFRLKWECHTEFATYTFAQAHEEVLSTDQAFARAPLAH- 120
              FGV  P          +    L  E HTEF+TY +  + +    T +     P  H 
Sbjct: 72  SHRFGVAEPDHATPLHGVTWDEGDLHCEKHTEFSTYLWCASLDS--ETGEPCGENPFKHG 129

Query: 121 -IPQQWLIALKGKLMVAAHVVVEPGSDDPAATARQMQRIFEGKLMSSSKVLQG-GEIWTD 178
            +P        G ++    + + P + +   T ++  R F+   +  S V  G   I TD
Sbjct: 130 FVP-------PGPVVSGIRLRLLPWTPE---TEKEADR-FDPASLCYSLVENGSAAILTD 178

Query: 179 FQIQSDGFSRFVVRDIDLRELQGGRLAQRILEIETYRMMALLGLPHAQQSGPLLNEIEGD 238
           F+   DG ++ +V   DL   + G LAQR+LEIETYR +ALL LP  +     L  +E  
Sbjct: 179 FRQDEDGLTQILVLARDLTPARAGALAQRLLEIETYRTLALLSLPLTRSMTSELRRMESR 238

Query: 239 LAALTAAMVQSEQSTTGTPEEQAEDERILRRITGLAARIEKLSLENSYRFSASQAYFRLV 298
           LAA+T  M  S         E+ + + +L  +TGLAA +E     N YRF AS+AY+ +V
Sbjct: 239 LAAITDEMCTSLV-------ERRDSDVLLSELTGLAAELEAGVAANLYRFGASRAYYEIV 291

Query: 299 QARIEELREQRIEGVPTIGEFMERRLAPAMNTCQAIARRQEALAERIAHTNDLLRTRIGI 358
           + R+  L E+ + G  T  +F++RR+APAM TCQ++  RQ  L++++     LLR+ I +
Sbjct: 292 EERLAALSEEAVSGYCTWADFLQRRIAPAMRTCQSVKERQTKLSDKLTRAIALLRSWIDV 351

Query: 359 VQERQNRQILESMNARAAQQLKLQQAVEGLSVAAISYYVIGLLGYAGKAAKAAGLPLNPD 418
             ERQNR +L SMN RA  QL+LQQ VEGLSVAAISYYV+ LLGY  K        + P 
Sbjct: 352 ELERQNRDLLASMNNRAKMQLRLQQTVEGLSVAAISYYVVSLLGYLLKGIPMVHDSVAPV 411

Query: 419 LATGLAMPVVAACVWLGLRRMHKGLG 444
           +A  + +P V   +W  +RR+    G
Sbjct: 412 MA--VLVPAVMLTIWWIVRRIRHAHG 435


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 779,570
Number of extensions: 30276
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 361
Effective length of database: 720,272
Effective search space: 260018192
Effective search space used: 260018192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)