BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1974.p
         (295 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095320|ref|YP_001100395.1| hypothetical protein HEAR2135 [...   476   e-136

>gi|134095320|ref|YP_001100395.1| hypothetical protein HEAR2135
           [Herminiimonas arsenicoxydans]
          Length = 305

 Score =  476 bits (1224), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 220/294 (74%), Positives = 254/294 (86%)

Query: 1   MLSYRHAFHAGNHADVLKHMVIIQLMRYLGQKDTAYMVIDTHAGAGVYALDGDYASKNAE 60
           MLSYRHAFHAGNHADVLKH+V IQL++YL QKDT YM IDTHAGAGVYALD +YA+KNAE
Sbjct: 1   MLSYRHAFHAGNHADVLKHLVQIQLLKYLNQKDTPYMYIDTHAGAGVYALDSNYAAKNAE 60

Query: 61  YETGIAKLWERKDLPAMVKEYVDVVKSLNPSGKMRYYPGSPYCAEKTMREQDRLRLFELH 120
           +ETGIAKLW+RKDLPA + EYV VVK+LNPSGKMRYYPGSPYCA+  MREQDRLRLFELH
Sbjct: 61  FETGIAKLWDRKDLPAALAEYVQVVKALNPSGKMRYYPGSPYCADSIMREQDRLRLFELH 120

Query: 121 PSEVKVLEDNFRKLEAHAAAQGQRPSTRGKRVMVYRGDGFQGLKALLPPPSRRGLVLIDP 180
           P++ K+L DNFRKL+AHAA QGQR + RGKR+M+ R +GFQGLKALLPPPSRR LVLIDP
Sbjct: 121 PADSKLLADNFRKLQAHAAEQGQRQTVRGKRIMIERANGFQGLKALLPPPSRRALVLIDP 180

Query: 181 PYEDKRDYAHVAQVLADALTRFPTGTYAVWYPVLQRNESRQLPERLKRLGAKSWLNVTLA 240
           PYEDK DY  V Q ++DALTRF +GTYAVWYPVL R ESRQLP++LKRL A  WLNVTL+
Sbjct: 181 PYEDKTDYRSVVQTVSDALTRFASGTYAVWYPVLNRLESRQLPDKLKRLTANGWLNVTLS 240

Query: 241 IHGPAPDGFGLHNSGMFILNPPWTLEAGLKEVMPYLIEVLGVDDSAEYVLESGE 294
           +  P+PDGFGLH+SGMF+ NPPWTLE  L+E+MPYL++ LG D  A + LESG+
Sbjct: 241 VTTPSPDGFGLHSSGMFVHNPPWTLEPMLRELMPYLVKTLGGDAGAGFTLESGQ 294


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 612,787
Number of extensions: 26337
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 214
Effective length of database: 733,452
Effective search space: 156958728
Effective search space used: 156958728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)