BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1972.p
         (134 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096587|ref|YP_001101662.1| transcriptional repressor for m...    56   6e-10

>gi|134096587|ref|YP_001101662.1| transcriptional repressor for
           molybdate uptake [Herminiimonas arsenicoxydans]
          Length = 300

 Score = 56.2 bits (134), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 54/90 (60%)

Query: 25  DLLQAIAQTGSISGAAREMAMSYRRAWLLVEEMNRCFASPLVATATGGARGGGAAVTELG 84
           +LL+ I  +GSIS AA  M MSY+ AW  VE +N     PLV    GG+ GGG  +T+ G
Sbjct: 61  ELLERIDASGSISAAASAMGMSYKAAWQAVEAINNLSHEPLVVRQPGGSTGGGTCLTDYG 120

Query: 85  QEVLARYRRMQKKAATAIAADLRHLHSLMQ 114
           + ++A YRR++++ A+A  A  R +    Q
Sbjct: 121 RRLVATYRRLEQEWASAPVAIGRSMSDFDQ 150


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 178,118
Number of extensions: 4841
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 62
Effective length of database: 763,107
Effective search space: 47312634
Effective search space used: 47312634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)