BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1971.p
         (256 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096586|ref|YP_001101661.1| molybdate-binding periplasmic p...    75   2e-15
gi|134094994|ref|YP_001100069.1| molybdenum ABC transporter peri...    69   2e-13

>gi|134096586|ref|YP_001101661.1| molybdate-binding periplasmic
           protein precursor [Herminiimonas arsenicoxydans]
          Length = 251

 Score = 75.5 bits (184), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 27/243 (11%)

Query: 25  AAQATDLVVSAAASLTNAFKELAQSFEQQHPGVKVITNFGASDILMQQIVRGAPADVFAS 84
           +A A ++ V+ AA+ T   K +A  FE+   G K + +FG++     QI  GAP +VF +
Sbjct: 20  SAFAEEVQVAVAANFTAPMKAIAADFEKA-TGHKTVLSFGSTGKFYSQITNGAPFEVFLA 78

Query: 85  ADQTAMDKAVAEKAVDAASRQNFAANQIVLIVPH----DAKQLPTSLADLTRAQYQRIAL 140
           AD     K   E  + A SR  +A  ++VL        DAK        L +  +  IAL
Sbjct: 79  ADDETPIKLEKENGIVAGSRFTYAIGKLVLWSAKPDFVDAKG-----EILKKGSFDHIAL 133

Query: 141 GNPASVPFGRYTKAALEQAGLWPQVQAKAVMAENVRTSLDYVARGEVDAGFVFATDAAVM 200
            NP   P+G      + + G+  ++Q K V  +++  +  +V+ G  + GFV  +     
Sbjct: 134 ANPKLAPYGAAAVETMNKLGVQEKLQPKFVQGDSIGQAFSFVSTGNAELGFVALS----- 188

Query: 201 PEKVKVALRIPSDTPATYPIAVTSGSRQPAL----------AAQFVAYVRSSSGQAVLAR 250
             +V    +I S +    P  + +  RQ A+          A+  + Y++S   +AV+  
Sbjct: 189 --QVYEGGKIKSGSAWIVPGNLHNAIRQDAVILSKGKDNKAASALIEYLKSEPAKAVIRS 246

Query: 251 YGF 253
           +G+
Sbjct: 247 FGY 249


>gi|134094994|ref|YP_001100069.1| molybdenum ABC transporter
           periplasmic molybdate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 267

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 20/260 (7%)

Query: 9   AALRTVCAATLILAAGAAQATDLVVSAAASLTNAFKELAQSFEQQHPGVKVITNFGASDI 68
            A+ TV     +L A   +   L+V AA SL  A  E   +++ Q  G    T +G S  
Sbjct: 12  GAVMTVSGWNGVLHAQTTEQLPLLV-AAGSLKTAMDETIAAYQAQ-GGSAFQTKYGPSGK 69

Query: 69  LMQQIVRGAPADVFASADQTAMDKAVAEKAVDAASRQNFAANQIVLIVPHDAKQLPTSLA 128
           L ++I   A  DVFASAD      A+A+K +   SR  F  N + ++   + K    ++ 
Sbjct: 70  LRKEIETSAKVDVFASAD-IEHTNALAQKKLLDVSRV-FTHNDLCVVARPELKLHVDNML 127

Query: 129 DLTRAQYQRIALGNPASVPFGRYT-----KAALEQAGLWPQVQAKAVMAENVRT-----S 178
           D+ R+   R+A   P S P G YT      A   Q G++  + AKA+             
Sbjct: 128 DVLRSPSVRVATSTPVSDPMGDYTWQFFRNAESRQPGIYQLLDAKALKLSGASVPAPGEK 187

Query: 179 LDYVARGE---VDAGFVFATDAAVMPEKVK--VALRIPSDTPATYPIAVTSGSRQPALAA 233
           L Y+   E    DA  ++ T+A +  + V     +RI  +        + +G    A   
Sbjct: 188 LPYITAFEDDKADAYIMYCTNAVITKKAVPQLHVVRIADELNVRSVYGIAAGLHSAA-GK 246

Query: 234 QFVAYVRSSSGQAVLARYGF 253
            FV +V  S+GQA+L ++GF
Sbjct: 247 DFVRFVMGSTGQAILKKHGF 266


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.128    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 383,627
Number of extensions: 13589
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 176
Effective length of database: 736,747
Effective search space: 129667472
Effective search space used: 129667472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)