BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1969.p (220 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 142 2e-35 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 141 3e-35 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 124 4e-30 gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 117 3e-28 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 109 1e-25 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 142 bits (357), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 118/210 (56%), Gaps = 9/210 (4%) Query: 12 RAGDRIFDLDIALASHS-QRIVLYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSA 70 R GD +I+L+ + + L GPSG GK+ L+ IAG PD G I L D Sbjct: 12 RFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI------LLDGV 65 Query: 71 EGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGLSRGSCNPRRPTGHPAVQRWLQAFEL 130 + V ++R V +FQ+YALFPH+TVA NIAF L N + V L+ L Sbjct: 66 DLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEM--ANTPKSEIKQKVDEALEDVRL 123 Query: 131 QAIAHSHPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHL 190 A +P ++SGGQRQRV++ARALV P++LLLDEP SALD LR++M+ EL LQ + Sbjct: 124 TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV 183 Query: 191 QVPMLLITHDPADVEALGQTVFELRDGQLR 220 + + +THD A+ AL + + G + Sbjct: 184 GITFVYVTHDQAEALALSHRIAVMNKGNIE 213 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 141 bits (355), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 8/189 (4%) Query: 33 LYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSAEGIDVRVQERNVAYLFQDYALF 92 L GPSG GK+ L+ IAGL +PD G + L D + V+ER V ++FQ YALF Sbjct: 33 LLGPSGCGKTTLLRIIAGLEQPDHGQV------LLDGEDASARHVRERQVGFVFQHYALF 86 Query: 93 PHLTVAQNIAFGLSR--GSCNPRRPTGHPAVQRWLQAFELQAIAHSHPAQISGGQRQRVA 150 H+TV +NIAFGL + P V + L+ +L +A +P Q+SGGQRQR+A Sbjct: 87 KHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIA 146 Query: 151 LARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHLQVPMLLITHDPADVEALGQT 210 LARAL EP +LLLDEPF ALD +R+ +R+ L L L V + +THD + + Sbjct: 147 LARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQ 206 Query: 211 VFELRDGQL 219 + + G + Sbjct: 207 IVLMNKGHV 215 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 124 bits (311), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 106/186 (56%), Gaps = 6/186 (3%) Query: 32 VLYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSAEGIDVRVQERNVAYLFQDYAL 91 L G SG GK+ L+AIAG G I + G+ + S + R + +FQDYAL Sbjct: 48 CLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEI--SNAHFTATPETRQIGVVFQDYAL 105 Query: 92 FPHLTVAQNIAFGLSRGSCNPRRPTGHPAVQRWLQAFELQAIAHSHPAQISGGQRQRVAL 151 FPHL+VA N+ FGL + + R+ + L L + P ++SGGQ+QRVAL Sbjct: 106 FPHLSVADNVGFGLRKLAAPERQAR----IAALLTLVGLASQGKKFPHELSGGQQQRVAL 161 Query: 152 ARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHLQVPMLLITHDPADVEALGQTV 211 ARAL +P++LLLDEPFS LD+ LR+R+ E+ ++ + +L+THD + A+ + Sbjct: 162 ARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQI 221 Query: 212 FELRDG 217 ++DG Sbjct: 222 GVMQDG 227 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 117 bits (294), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 115/214 (53%), Gaps = 5/214 (2%) Query: 7 IHKQLRAGDRIFDLDIALASHSQRIV-LYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRT 65 I + + + F L + LA + I L+G SGSGK+ L+ IAGL R ++ V G Sbjct: 8 IKARFKVNYQAFTLTVDLALPGRGITALFGASGSGKTTCLRVIAGLERAADVYLEVNGEV 67 Query: 66 LFDSAEGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGLSRGSCNPRRPTGHPAVQRWL 125 D A I + +R + Y+FQ+ +LF HL V +N+ +G+ R + + R H ++ + Sbjct: 68 WQDDAHNIFLPTHQRPLGYVFQEASLFAHLNVQRNLEYGMRRIAKSAR----HVSLDHAV 123 Query: 126 QAFELQAIAHSHPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQRMRQELAE 185 ++ + P ++SGG+RQRVA+ARAL P +LL+DEP +ALD + + L Sbjct: 124 SLLDIGHLLQRKPDKLSGGERQRVAIARALATSPRILLMDEPLAALDAKRKAEIMPYLER 183 Query: 186 LQTHLQVPMLLITHDPADVEALGQTVFELRDGQL 219 L L +P+L ++H +V L + L G++ Sbjct: 184 LHDELDIPVLYVSHSADEVARLADHLVLLETGRV 217 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 17/186 (9%) Query: 19 DLDIALASHSQRIVLYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSAEGIDVRVQ 78 +++ ALA + + L G SGSGKS L+ +AGLI D+G + RG+ ++ GI Sbjct: 29 NVNFALA-EGEIVALLGKSGSGKSTLLRIMAGLIAADQGTAKYRGQEIYSPVSGI----- 82 Query: 79 ERNVAYLFQDYALFPHLTVAQNIAFGL-SRGSCNPRRPTGHPAVQRWLQAFELQAIAHSH 137 A +FQ +ALFP LTV QN+ GL ++G R A+ L L + Sbjct: 83 ----AMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAM---LDLIGLAGFGGAL 135 Query: 138 PAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHLQVP---M 194 P ++SGG +QRV +AR LV P++LL+DE FSALD+ + +R ++ E+ ++P + Sbjct: 136 PRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEEKRIPTKGI 195 Query: 195 LLITHD 200 L+++H+ Sbjct: 196 LIVSHN 201 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 391,003 Number of extensions: 14326 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 42 Length of query: 220 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 142 Effective length of database: 743,337 Effective search space: 105553854 Effective search space used: 105553854 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)