BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1968.p
         (434 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094896|ref|YP_001099971.1| isocitrate lyase [Herminiimonas...   782   0.0  
gi|134096419|ref|YP_001101494.1| carboxyphosphonoenolpyruvate ph...    69   3e-13

>gi|134094896|ref|YP_001099971.1| isocitrate lyase [Herminiimonas
           arsenicoxydans]
          Length = 443

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/428 (89%), Positives = 405/428 (94%)

Query: 1   MSTREQQIQALERDWAENPRWKGIKRNYSAADVVRLRGSLQIEHTLAKRGADKLWNLVHN 60
           M+TREQQIQAL +DW ENPRWKG+KRNY+A DVVRLRGSLQI HTLA+RGA+KLW + +N
Sbjct: 1   MATREQQIQALNKDWNENPRWKGVKRNYTAEDVVRLRGSLQIGHTLAQRGAEKLWEMCNN 60

Query: 61  EPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK 120
           EPFVN+LGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK
Sbjct: 61  EPFVNSLGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK 120

Query: 121 RINNTFARADQIQWSEGRDDIDFFAPIVADAEAGFGGVLNAFELMKSMIEAGAAGVHFED 180
           RINNTF RADQIQWSE   DIDFFAPIVADAEAGFGGVLNA+ELMKSMIEAGAAGVHFED
Sbjct: 121 RINNTFQRADQIQWSEDSGDIDFFAPIVADAEAGFGGVLNAYELMKSMIEAGAAGVHFED 180

Query: 181 QLASVKKCGHMGGKVLVPTREACEKLNAARLAADVMGTKTLVIARTDAEAADLLTSDVDA 240
           QLASVKKCGHMGGKVLVPTREA EKLNAARLAADV GT TLVIARTDAEAADLLTSDVD 
Sbjct: 181 QLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVCGTTTLVIARTDAEAADLLTSDVDE 240

Query: 241 NDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYADMVWCETGKPDLAFAKTFAEAIHA 300
           ND+PFL+GERTVEGF+KT  G DQA+SRGLAYA Y DM+WCETGKPDL FAK FA+AIHA
Sbjct: 241 NDQPFLTGERTVEGFYKTRSGFDQAVSRGLAYAPYVDMLWCETGKPDLRFAKQFADAIHA 300

Query: 301 KFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHALNYSMFNLAH 360
           KFPGK+LAYNCSPSFNW+KNLDDATIA FQ+ELGAMGYKFQFITLAGFH+LNYSMFNLAH
Sbjct: 301 KFPGKMLAYNCSPSFNWRKNLDDATIATFQKELGAMGYKFQFITLAGFHSLNYSMFNLAH 360

Query: 361 GYARNQMSAFVELQEAEFAAAAKGFTAVKHQREVGTGYFDAVTQAIQQGQSSTTALHGST 420
           GYARNQMSAFVELQEAEFAAAA+GFTAVKHQREVGTGYFDA+TQ IQQG+SSTTALHGST
Sbjct: 361 GYARNQMSAFVELQEAEFAAAAQGFTAVKHQREVGTGYFDAITQVIQQGKSSTTALHGST 420

Query: 421 EDEQFFDD 428
           EDEQFFD+
Sbjct: 421 EDEQFFDN 428


>gi|134096419|ref|YP_001101494.1| carboxyphosphonoenolpyruvate
           phosphonomutase or methylisocitrate lyase [Herminiimonas
           arsenicoxydans]
          Length = 293

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 94/219 (42%), Gaps = 59/219 (26%)

Query: 68  GALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMY---PDQSLYPANSVPMVVKRINN 124
           GA     A      G +A+Y++G   AG  N    MY   PDQ     N +     RI  
Sbjct: 26  GAFNALSARVIADLGFEALYITG---AGVTN----MYFGLPDQGFIGLNELADHTARI-- 76

Query: 125 TFARADQIQWSEGRDDIDFFAPIVADAEAGFGGVLNAFELMKSMIEAGAAGVHFEDQLAS 184
                        RD +D   PI+ DA+ GFG  LN    ++++  AGA  V  EDQ+A 
Sbjct: 77  -------------RDAVDI--PIIVDADTGFGNALNVRHTIRTLERAGADAVQLEDQVAP 121

Query: 185 VKKCGHMGGKVLVPTREACEKLNAARLAADVMGTKTLVIARTDAEAADLLTSDVDANDKP 244
            K+CGH  GK ++   E   K++AA  A    G   L++ARTDA                
Sbjct: 122 -KRCGHFNGKEVISCAEMVGKIHAAVDARSNEG--MLIMARTDA---------------- 162

Query: 245 FLSGERTVEGFFKTHPGIDQAISRGLAYAEY-ADMVWCE 282
                R+V GF       D A+ R   Y+E  AD+++ E
Sbjct: 163 -----RSVHGF-------DDALERAARYSEAGADILFVE 189


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 804,197
Number of extensions: 32642
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 434
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 350
Effective length of database: 723,567
Effective search space: 253248450
Effective search space used: 253248450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)