BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1965.p (561 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 117 1e-27 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 109 4e-25 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 105 4e-24 gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [... 105 4e-24 gi|134095442|ref|YP_001100517.1| diguanylate cyclase/phosphodies... 103 2e-23 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 148/288 (51%), Gaps = 31/288 (10%) Query: 285 VLLGARSQGSKIEVAFRLHRDPAGLEWLAISAAPRSDFLGSVTSGVYQTLILGLLAVGLS 344 +L+ + G+ + +AF L ++ ++ R+ + +V GV I+G+ G++ Sbjct: 150 ILIAIAASGAALWIAFTLRKNRPHMK--------RARAMAAVVMGVA---IIGMHYTGMA 198 Query: 345 ---FVIGLLLLR--------WVLRDIRKLTLAAKSIGNGSPFPTLNIDRNDEIGQLAQSF 393 F +G + W+ + +TL+ +I + L+ + LA+S Sbjct: 199 AANFPLGSICTAASEGIPPGWLALVVIIVTLSVLAIALLTS--VLDTRLESQTSLLAKSL 256 Query: 394 V----EMERNLRTDRLTNVLNRDSLIAQIDFRRRNSSQAVPLHFALLFIDLDRFKAVNDE 449 E+ R D LT + NR L +++ + + ++ FAL+FIDLD FKA+ND Sbjct: 257 AVANQELTRQALQDNLTKLPNRTLLEDRLN-QILHKAERTHTRFALMFIDLDGFKAINDS 315 Query: 450 YGHDEGDKVLITIAERLQHSLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGDKIRHAVN 509 GH GD +LI +A+R++ S+R D+ AR GGDEFV+ + VTE E A S+ DK+ + +N Sbjct: 316 LGHHIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLIE-VTEPEDAASVADKLCNIIN 374 Query: 510 KPIAGRDGQQYTVDASVGVSLYPDDGLDVETLLRVADSRMFDQKRLHR 557 +P D V ASVG+++YPDDG LL AD+ M+ K R Sbjct: 375 QPFE-IDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMYHTKSTGR 421 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 9/155 (5%) Query: 403 DRLTNVLNRDSLI--AQIDFRRRNSSQAVPLHFALLFIDLDRFKAVNDEYGHDEGDKVLI 460 D LT + NR L AQ R QA A++F+DLD FK +ND GH+ GD +L+ Sbjct: 435 DVLTGLPNRALLDERAQRALRLAEEDQAT---LAVMFLDLDHFKNINDTLGHNLGDTLLV 491 Query: 461 TIAERLQHSLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGDKIRHAVNKPIAGRDG-QQ 519 +A+RL+ LR DD+++R GGDEFV+ L G E A+ I ++ A+N+P R G + Sbjct: 492 ELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANR-ESAKKIAQELMRAINEPY--RIGSHE 548 Query: 520 YTVDASVGVSLYPDDGLDVETLLRVADSRMFDQKR 554 V AS+G+++YP DG+D ETL + AD M+ K+ Sbjct: 549 LNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQ 583 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 56/124 (45%), Positives = 75/124 (60%), Gaps = 1/124 (0%) Query: 434 ALLFIDLDRFKAVNDEYGHDEGDKVLITIAERLQHSLRHDDSVARFGGDEFVVYLHGVTE 493 A+ F+DLD+FK +ND GH GD++L A+RL LR D+VAR GGDEFV+ L Sbjct: 320 AIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTSQPS 379 Query: 494 VEVARSIGDKIRHAVNKPIAGRDGQQYTVDASVGVSLYPDDGLDVETLLRVADSRMFDQK 553 E ++ H V +P +G ++ + SVGV+L PDDG D ETLL+ ADS M+ K Sbjct: 380 EESITHTMQRVLHEVAQPWMA-NGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAK 438 Query: 554 RLHR 557 L R Sbjct: 439 ELGR 442 >gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [Herminiimonas arsenicoxydans] Length = 526 Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 22/221 (9%) Query: 348 GLLLLRWVL-----RDIRKLTLAAKSIGNGSPF--PTLNIDRNDEIG----QLAQSFVEM 396 G L + W++ IR LT A +G G P L++ DE+G + ++ + Sbjct: 297 GSLAIAWMIGGRIAASIRGLTGPALELGRGKKVHVPPLHLREADEVGGSLIRASEMLQKA 356 Query: 397 ERNLRTDRLTNVLNR---DSLI-AQIDFRRRNSSQAVPLHFALLFIDLDRFKAVNDEYGH 452 + D LT + NR D ++ Q+ RN + ++L+IDLD FKAVND YGH Sbjct: 357 QHQANHDVLTGLANRGLFDEIVNQQLALCERNQTS-----LSVLYIDLDGFKAVNDAYGH 411 Query: 453 DEGDKVLITIAERLQHSLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGDKIRHAVNKPI 512 + GD++L +A RL+ S RH D VAR GGDEF + + G T ++ A +K+ +++ Sbjct: 412 ETGDQLLCEVAARLKASSRHSDLVARLGGDEFAIVMVG-TGLKDAAFFAEKLVESLSAVY 470 Query: 513 AGRDGQQYTVDASVGVSLYPDDGLDVETLLRVADSRMFDQK 553 + + + AS+GV+ YPD L + LL+ AD M+ K Sbjct: 471 VFGNLSAH-ISASIGVASYPDCALTSDALLQYADRAMYQAK 510 >gi|134095442|ref|YP_001100517.1| diguanylate cyclase/phosphodiesterase [Herminiimonas arsenicoxydans] Length = 897 Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Query: 395 EMERNLRTDRLTNVLNRDSLIAQIDFRRRNSSQAVPLHFALLFIDLDRFKAVNDEYGHDE 454 EM R D LT + NR L+ + ++Q+ A+LFIDLD FK +ND GH Sbjct: 459 EMSRLATEDGLTCLPNRHWLLNYLP-TALATAQSNATLLAILFIDLDDFKNINDTLGHSA 517 Query: 455 GDKVLITIAERLQHSLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGDKIRHAVNKPI-A 513 GD++L +A RL+ +R D V R GGDEF V L + E I I + +P Sbjct: 518 GDQLLCAVAARLKSVVRASDKVIRIGGDEFTVVLEAIHSEEEVAHIAYAINQVLQEPFDL 577 Query: 514 GRD--GQQYTVDASVGVSLYPDDGLDVETLLRVADSRMFDQK 553 RD Q+ + AS+G+S++P DG D+ETL++ AD M+ K Sbjct: 578 SRDVTAQKNRIGASIGISMFPRDGGDIETLIKNADIAMYAAK 619 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,088,491 Number of extensions: 47153 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 29 Length of query: 561 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 474 Effective length of database: 713,682 Effective search space: 338285268 Effective search space used: 338285268 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)