BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1964.p (861 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095329|ref|YP_001100404.1| ATP-dependent protease Hsp 100 ... 1490 0.0 gi|134095621|ref|YP_001100696.1| clpA-clpP serine protease ATP-d... 311 9e-86 >gi|134095329|ref|YP_001100404.1| ATP-dependent protease Hsp 100 [Herminiimonas arsenicoxydans] Length = 860 Score = 1490 bits (3858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 720/861 (83%), Positives = 802/861 (93%), Gaps = 3/861 (0%) Query: 1 MRLDKLTTKLQEALADAQSQAVGHDNQYIEPVHLILALLNQDDGGARSLLQRAGVNVNGL 60 MRLDKLTTKLQEALADAQS AVG+DNQYIEPVH+++ALL+QDD RSLLQRAG N+NG+ Sbjct: 1 MRLDKLTTKLQEALADAQSHAVGNDNQYIEPVHVLVALLSQDDSSTRSLLQRAGANINGM 60 Query: 61 ISALQAALKRLPQVSGNGGEVQVGRELVALLNLADKEAQKHGDQFVASEMVLLGLVDDKS 120 ++AL++AL+RLP+VSG GG+VQ+ R+L ALLNLADKE+Q HGD+F+A+EM+LL L +DKS Sbjct: 61 VTALKSALERLPKVSGTGGQVQISRDLTALLNLADKESQMHGDEFIATEMLLLALTEDKS 120 Query: 121 DAGRAARENGLTRKSLEAAITAVRGGASVSSQQDEGQREALKKYTLDLTERARAGKLDPV 180 +AG+ ARENGLTRK+L+AAI AVRG + V S + EGQREALKKYT+DLTERAR GKLDPV Sbjct: 121 EAGKIARENGLTRKALQAAIKAVRGSSKVDSAEGEGQREALKKYTMDLTERARIGKLDPV 180 Query: 181 IGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSL 240 IGRDDEIRR IQ+LQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVP+SLK KRVLSL Sbjct: 181 IGRDDEIRRTIQILQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLKGKRVLSL 240 Query: 241 DMAALLAGAKYRGEFEERLKAVLKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLK 300 DMA+LLAGAKYRGEFEERLKAVL E+A+DEGQTIVFIDE+HT+VGAGKAEGAMDAGNMLK Sbjct: 241 DMASLLAGAKYRGEFEERLKAVLTELAEDEGQTIVFIDEMHTLVGAGKAEGAMDAGNMLK 300 Query: 301 PALARGELHCVGATTLDEYRQYIEKDAALERRFQKILVDEPSVEATIAILRGLQEKYEVH 360 PALARGELHCVGATTLDEYR+YIEKDAALERRFQK+LVDEP+VEATIAILRGLQEKYEVH Sbjct: 301 PALARGELHCVGATTLDEYRKYIEKDAALERRFQKVLVDEPTVEATIAILRGLQEKYEVH 360 Query: 361 HGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIEIDSKPEVMDKLDRRLI 420 HGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAA+KIKIEIDSKPEVMD+LDRR+I Sbjct: 361 HGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAAKIKIEIDSKPEVMDRLDRRVI 420 Query: 421 QLKIEREAVKREKDEASQKRLQLIEEEIEKLEREYADLEEIWKAEKSTAQGGQQLKEEIE 480 QLKIEREA+++EKDEASQKRL LIEEEIEKL REYADLEEIWKAEKS AQG Q +KE IE Sbjct: 421 QLKIEREAIRKEKDEASQKRLALIEEEIEKLGREYADLEEIWKAEKSAAQGSQHIKEAIE 480 Query: 481 KVRLQMEEATRKSDWQKVSELKYGKLAELEAALEVQNKKDAAGVVSEKPKLVRTQVGAEE 540 K RLQMEEATR+SDWQ+VSEL+Y L ELEA L+ +A+ + KP+LVRTQVGAEE Sbjct: 481 KARLQMEEATRQSDWQRVSELQYKTLPELEAQLKNAVTGEAS---AGKPQLVRTQVGAEE 537 Query: 541 IAEIVARATGIPVSRMMQGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPS 600 IAE+V+RATGIPVSRMMQGEREKLL MED LH+RVVGQ EAIVAVSDAIRRSRAGLGDP Sbjct: 538 IAEVVSRATGIPVSRMMQGEREKLLQMEDALHKRVVGQHEAIVAVSDAIRRSRAGLGDPD 597 Query: 601 KPYGSFMFLGPTGVGKTELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVG 660 +PYGSFMFLGPTGVGKTELCKALAS+LFDTE++++RIDMSEFMEKHSVARLIGAPPGYVG Sbjct: 598 RPYGSFMFLGPTGVGKTELCKALASFLFDTEDSLVRIDMSEFMEKHSVARLIGAPPGYVG 657 Query: 661 YEEGGYLTEAVRRKPYSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIV 720 YEEGGYLTEAVRRKPY VILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIV Sbjct: 658 YEEGGYLTEAVRRKPYCVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIV 717 Query: 721 MTSNLGSHKIQSMEDSDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAK 780 MTSNLGSHKIQ+ME ++PAL+K+AVMAEV++HFRPEFINR+DEIVVFHALD KNIGAIAK Sbjct: 718 MTSNLGSHKIQAMEGNEPALIKMAVMAEVQSHFRPEFINRIDEIVVFHALDEKNIGAIAK 777 Query: 781 IQLRILEQRLAKLEIGLQISEAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAG 840 IQL LEQRLA++++ + +SE LQKIAEAGFDPVYGARPLKRAIQQ+IENPLSK IL G Sbjct: 778 IQLHTLEQRLARMDMSMDVSEDALQKIAEAGFDPVYGARPLKRAIQQQIENPLSKAILEG 837 Query: 841 KFGPKDVVQVDVQNGQLAFSK 861 KFGPKDV+ VDV+NG+L F+K Sbjct: 838 KFGPKDVISVDVKNGELEFAK 858 >gi|134095621|ref|YP_001100696.1| clpA-clpP serine protease ATP-dependent specificity subunit [Herminiimonas arsenicoxydans] Length = 767 Score = 311 bits (797), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 186/402 (46%), Positives = 254/402 (63%), Gaps = 22/402 (5%) Query: 26 NQYIEPVHLILALLNQDDGGARSLLQRAGVNVNGLISALQAAL-KRLPQVSGNG---GEV 81 +++I HL+LALL D+ A +L+ VN++ L L + P V G + Sbjct: 22 HEFITVEHLLLALL--DNPSAAEVLRACAVNIDDLRKTLTNFIGDNTPTVPGAAEVDTQP 79 Query: 82 QVGRELVALLNLADKEAQKHGDQFVASEMVLLGLVDDK-SDAGRAARENGLTRKSLEAAI 140 +G + V + ++ +G + V VL+ + +K S A + G+TR + I Sbjct: 80 TLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVVNFI 139 Query: 141 T-AVRG-----------GASVSSQQDEGQRE-ALKKYTLDLTERARAGKLDPVIGRDDEI 187 + VR GA + D Q+E AL ++T +L + A GK+DP+IGR+ E+ Sbjct: 140 SHGVRKDQQIDVQKSSEGAEDAPSADGQQKESALDQFTQNLNKLATEGKIDPLIGREGEV 199 Query: 188 RRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSLDMAALLA 247 R IQ L RR KNNP+L+GE GVGKTAI EGLA RI GEVP+ L++ V SLDM ALLA Sbjct: 200 ERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITQGEVPEVLQNAVVYSLDMGALLA 259 Query: 248 GAKYRGEFEERLKAVLKEIAQDEGQTIVFIDELHTMVGAGKAEG-AMDAGNMLKPALARG 306 G KYRG+FE+RLKAVLK++ +D I+FIDE+HT++GAG A G +DA N+LKPAL+ G Sbjct: 260 GTKYRGDFEQRLKAVLKQL-KDNPNGILFIDEIHTIIGAGSASGGTLDASNLLKPALSNG 318 Query: 307 ELHCVGATTLDEYRQYIEKDAALERRFQKILVDEPSVEATIAILRGLQEKYEVHHGVDIT 366 +L C+GATT E+R EKD AL RRFQKI V+EP+VE TI ILRGL+ ++E HHGV + Sbjct: 319 QLKCIGATTFTEFRGVFEKDHALSRRFQKIDVNEPTVEQTIQILRGLKSRFEEHHGVKYS 378 Query: 367 DPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIEIDSK 408 A+V+AAEL+ R+I DR LPDKAID+IDEA + +I SK Sbjct: 379 SSALVSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK 420 Score = 278 bits (710), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 153/345 (44%), Positives = 221/345 (64%), Gaps = 11/345 (3%) Query: 512 ALEVQNKKDAAGVVSEKPKLVRTQVGAEEIAEIVARATGIPVSRMMQGEREKLLHMEDVL 571 A++V ++ AA + K K +T +G EI +I+++ IP + Q +R KL +E L Sbjct: 402 AIDVIDEAGAAQRILPKSKQKKT-IGKAEIEDIISKIARIPAQTVNQDDRSKLQTIERDL 460 Query: 572 HERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVGKTELCKALASYLFDTE 631 V GQD A+ A+ AI+ +RAGLG KP GSF+F GPTGVGKTE K LA ++ E Sbjct: 461 KNVVFGQDPALEALGSAIKVARAGLGKTDKPIGSFLFSGPTGVGKTEAAKQLA-FIMGIE 519 Query: 632 EAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEIEKAHPDV 691 +IR DMSE+ME+H+V+RLIGAPPGYVG+++GG LTEA+ +KP++V+LLDEIEKAHPD+ Sbjct: 520 --LIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHAVLLLDEIEKAHPDI 577 Query: 692 FNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKIQ----SMEDSDPALVKLAVMA 747 FN+LLQV+D G +TD GR DF+N +I+MT+N G+ +Q D A + MA Sbjct: 578 FNILLQVMDHGTLTDNNGRKADFRNVIIIMTTNAGAESLQKRSIGFTDKKEAGDE---MA 634 Query: 748 EVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQRLAKLEIGLQISEAGLQKI 807 +++ F PEF NR+D I+ F ALD + I + L LE++L + ++ ++ + Sbjct: 635 DIKRMFTPEFRNRLDAIISFRALDEEIILRVVDKFLMQLEEQLHEKKVEAIFTDNLRTFL 694 Query: 808 AEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFGPKDVVQVDV 852 A+ GFDP+ GARP+ R IQ I L+ ++L G+ V VD+ Sbjct: 695 AKKGFDPLMGARPMSRLIQDMIRKALADELLFGRLVTGGKVTVDL 739 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.134 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,479,730 Number of extensions: 60348 Number of successful extensions: 327 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 3 Length of query: 861 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 771 Effective length of database: 703,797 Effective search space: 542627487 Effective search space used: 542627487 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)