BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1962.p (326 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 217 7e-58 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 179 2e-46 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 149 1e-37 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 141 4e-35 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 99 2e-22 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 217 bits (552), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 115/284 (40%), Positives = 175/284 (61%), Gaps = 2/284 (0%) Query: 7 MRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTEAGERYL 66 M+ F VVEA SFT A ++ ++ A VS+ V LE HL TRL+NRTTRR++LTE+G Y Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 LRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDVAVELT 126 RC QI++ VDEAE A+ + P G L++ SFG + P ++ Y +RYP+V +++ Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 127 LAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQQPADLL 186 LA R D++E+GYD+++ + LP+SGLI R+L T +LCA+PAYL +G PQ P DL Sbjct: 121 LADRRVDLIEDGYDLAIRVG-NLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLK 179 Query: 187 HHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGVLPIYSA 246 H+CL S S DEW + + + V + N + + A +G G+ P + Sbjct: 180 QHACLNY-SYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIV 238 Query: 247 VDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWM 290 D ++AG +V ++ +G+YA+YPSR++L AK+ T+VD++ Sbjct: 239 ADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 179 bits (454), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 154/290 (53%), Gaps = 1/290 (0%) Query: 1 MDTLQNMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 60 MD + ++ F +V+ GS AAQ++G+T VS+ +A +E LR RL+NRTTRRI+LT Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 61 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 120 GE YL ++++ ++ E S V G L+I A FG+R++ P +S + + YP+ Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 121 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQ 180 V V+L L R +++E+G+D + +LPD+ L R++ ++CA+PAYL +G+P Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFG-QLPDARLTARKIADNRRLVCASPAYLKNHGIPL 179 Query: 181 QPADLLHHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGV 240 P DL H+C+ L W + V+ N E +G GI V Sbjct: 180 TPRDLQKHNCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVV 239 Query: 241 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWM 290 + LR+G + VL +L +Y ++P++ +L AK VD+M Sbjct: 240 RSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFM 289 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 149 bits (377), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 145/287 (50%), Gaps = 1/287 (0%) Query: 1 MDTLQNMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 60 MD L+ + F VE SF AA + +T V R + LE+ L RL++R+TRR+ALTE Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 120 G YL C++++S +D+AE+ SA + K SG L I A SFG+++V P + +++P Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 121 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQ 180 + + L R+ D+++EGYD+ + + + D + +L ++C P Y K+G P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTI-DPNFVAIKLAANKRVVCGTPDYFKKHGKPK 179 Query: 181 QPADLLHHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGV 240 DL H+CL W + + N E + + EG+GI Sbjct: 180 TLDDLAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAW 239 Query: 241 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWV 287 ++ L +GT+ VL + + A+YP ++ + AK+ ++ Sbjct: 240 RSVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFI 286 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 141 bits (356), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 151/293 (51%), Gaps = 10/293 (3%) Query: 6 NMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTEAGERY 65 +++ F V+++G+ AAQ +G TT+ VSR ++ LE L T L+ RTTRR+ LT+ G + Sbjct: 7 DLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLF 66 Query: 66 LLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDVAVEL 125 L + + I++ +DEAE +PSGRLRI A F ++P ++ + YP + +EL Sbjct: 67 LKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLEL 126 Query: 126 TLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQQPADL 185 T ++ D+LE D+++ + L DS L R L L A+P YL ++G+P P L Sbjct: 127 TSNDQVADLLEHRTDIAIRIG-NLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQL 185 Query: 186 LHHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGVLPIYS 245 H L + S + W + G + + F + E + G GI L Y Sbjct: 186 AGHQLLGFLQFESG-NTWPIRHAGGEGLTVTPALF-ASSGETLRALALHGQGIASLADYM 243 Query: 246 AVDALRAGTIVRVLPQ----HRLQNMGVYALYPSRQYLDAKISTWVDWMHETV 294 D + AG +VR+L +R Q ++A+Y L +IS +++++ + + Sbjct: 244 TRDDIAAGRLVRILENYYTGYRQQ---IHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 3/288 (1%) Query: 4 LQNMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTEAGE 63 ++ +R+F E+ SF AA ++G + V+RA+ LE+H L +R+TR++ +T GE Sbjct: 5 MELLRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFGE 64 Query: 64 RYLLRCQQIMS-YVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDVA 122 L + + + + D S SG +RI A S G R V+P++ R+PD+ Sbjct: 65 GLLDQVRPALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVAARHPDIT 124 Query: 123 VELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQQP 182 +++ L+ RI + ++EG DV + + + DS + R+ + AAP + K GVP+ Sbjct: 125 LDVRLSDRISNTVDEGIDVGIRVG-FMRDSRFVARKAADMKLPIVAAPRLIKKVGVPEN- 182 Query: 183 ADLLHHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGVLP 242 D L + I+ W G + A+ + A G+ L Sbjct: 183 IDALSSLPATVALDINTGRPWPWHFKAGRQWTPAAPTLVADNADMEMGAALAGIAFAQLA 242 Query: 243 IYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWM 290 Y A + +G +VRVL G+Y P R + ++ D M Sbjct: 243 DYMAAPYIASGKLVRVLESEEPPAWGLYVYRPQRGPIPGRVRAVFDEM 290 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 576,979 Number of extensions: 22999 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 12 Length of query: 326 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 244 Effective length of database: 730,157 Effective search space: 178158308 Effective search space used: 178158308 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)