BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1951.p
         (214 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094684|ref|YP_001099759.1| hypothetical protein HEAR1461 [...   197   3e-52

>gi|134094684|ref|YP_001099759.1| hypothetical protein HEAR1461
           [Herminiimonas arsenicoxydans]
          Length = 145

 Score =  197 bits (502), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/140 (67%), Positives = 109/140 (77%)

Query: 70  FTRRGHVAVGLDGTAEFVEMARAASGCEVLHQDFLQLDLPLQRFDGIFANASLFHVPSAE 129
           F   GH  VGLDG+AE V MAR  + CEV  QDFLQL LP Q+FDG+FANASLFHVPS E
Sbjct: 4   FIELGHHPVGLDGSAELVRMAREDAQCEVWQQDFLQLALPAQQFDGVFANASLFHVPSQE 63

Query: 130 LPRVLGQLRASLKPGGILFSSNPRGADLEGWSGPRYGVWHSLEGWRGYLEPAGFIELRHY 189
           LPRVL QL ASLK GG+LF+SNPRG + EGWSG RYG ++    W+ ++  AGF+EL HY
Sbjct: 64  LPRVLRQLHASLKAGGVLFTSNPRGENREGWSGDRYGAYYEWPAWQQFMTDAGFVELEHY 123

Query: 190 YRPDGLPREQQPWLASVWQK 209
           YRP GLPREQQPWLASVW+K
Sbjct: 124 YRPPGLPREQQPWLASVWRK 143


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 462,681
Number of extensions: 19858
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 136
Effective length of database: 743,337
Effective search space: 101093832
Effective search space used: 101093832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)