BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1949.p
         (427 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095333|ref|YP_001100408.1| molybdopterin biosynthesis prot...   562   e-161
gi|134094627|ref|YP_001099702.1| molybdopterin biosynthesis prot...   229   3e-61

>gi|134095333|ref|YP_001100408.1| molybdopterin biosynthesis
           protein, molybdenum incorporation step [Herminiimonas
           arsenicoxydans]
          Length = 417

 Score =  562 bits (1449), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/414 (66%), Positives = 329/414 (79%), Gaps = 6/414 (1%)

Query: 18  PMQSVSQALDILLAAAVPVEQSETIDTLDACGRVLAAPVQAHINVPGMDNSQMDGYAVRA 77
           P+ SV++AL  LL++A  +  ++T+ TL+A GR+LA    + ++VP +DN+ MDGYAVRA
Sbjct: 6   PLLSVAEALAFLLSSARKITVTQTLSTLEANGRILAVAQSSQLDVPPVDNTSMDGYAVRA 65

Query: 78  VDCVSGDTRLRVSQRIPAGHVGQALEPGTAARIFTGAMMPEGADAVVMQEACEADGEH-- 135
            DCVSG   LRVSQRIPAGHVGQ LE G AARIFTGAM+P+GADAVVMQE C A  E   
Sbjct: 66  ADCVSGAAVLRVSQRIPAGHVGQPLEAGCAARIFTGAMIPQGADAVVMQEVCVASKEGAD 125

Query: 136 --VVIRHVPKAGEWVRTIGEDIRQGSIILAAGTRLRAQELGLAASIGQAQLQVVRPVRVA 193
             V ++H P++GEW+R  GEDIR GS IL AG RLRAQE+GLAAS+G A L VVR +RVA
Sbjct: 126 DLVTVKHAPQSGEWIRRAGEDIRAGSEILHAGQRLRAQEIGLAASVGLATLPVVRKLRVA 185

Query: 194 VFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQQLGCQVSDYGIVPDSLEATRQTLREAA 253
           VFFTGDEL MPG  LKPG IYNSN+F LRGLL+ LGC ++DYGIVPD+L ATR TLR AA
Sbjct: 186 VFFTGDELAMPGDVLKPGAIYNSNKFTLRGLLENLGCDITDYGIVPDTLAATRDTLRRAA 245

Query: 254 REHDLIITSGGVSVGEEDHVKPAVQAEGRIKLWQIAMKPGKPLAFGQVRRGQGVGEGGSE 313
            EHDLIITSGGVSVGEEDH+KPAV+AEG + +WQIA+KPGKPLAFG+V R +  G+    
Sbjct: 246 AEHDLIITSGGVSVGEEDHIKPAVEAEGHLNMWQIAVKPGKPLAFGEVYRAEKSGKENDT 305

Query: 314 AFFLGLPGNPVASFVTFLLFVRPFLLRLQGLPREAVLPQPVAMRADFDWPRADRRQEFLR 373
           AFFLGLPGNPV+SFVTFLLFVRPF+LRLQG+  + V P+  AMRADF+ P+ DRR EFLR
Sbjct: 306 AFFLGLPGNPVSSFVTFLLFVRPFILRLQGV--QDVAPRAYAMRADFNLPKGDRRNEFLR 363

Query: 374 VRRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGDMVQFLAFDHLLH 427
            + N +GGLDLFP+Q S VLTST W DGLIDNPPG+ IA GD+V+F++F  L+H
Sbjct: 364 AKINTEGGLDLFPNQSSGVLTSTVWGDGLIDNPPGRAIAQGDIVRFISFSDLMH 417


>gi|134094627|ref|YP_001099702.1| molybdopterin biosynthesis protein
           [Herminiimonas arsenicoxydans]
          Length = 438

 Score =  229 bits (583), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 153/406 (37%), Positives = 214/406 (52%), Gaps = 26/406 (6%)

Query: 35  PVEQSETIDTLDACGRVLAAPVQAHINVPGMDNSQMDGYAVRAVDCV-SGDTRLRVSQRI 93
           P+   E I    A GRVLA  + + INVP  DNS MDGYA+   +     D  L++   I
Sbjct: 45  PINAVEKIALRSALGRVLALDIVSPINVPSHDNSAMDGYALHGSELNPKADLSLKI---I 101

Query: 94  PAGHVGQALE----PGTAARIFTGAMMPEGADAVVMQEACE--ADGEHVVIRHVPKAGEW 147
              + G+A +     G   RI TGA+MP G D V+ QE     +D    +     K G+ 
Sbjct: 102 GTAYAGRAYDGKVGSGECVRIMTGAVMPGGCDTVIPQEFVRDASDAGMTIPAGAVKLGDN 161

Query: 148 VRTIGEDIRQGSIILAAGTRLRAQELGLAASIGQAQLQVVRPVRVAVFFTGDELTMPGQP 207
            R  GED++ G+  L  G  L   +LGL AS+G  ++ V R +RVA F TGDEL   G+ 
Sbjct: 162 RRLQGEDLKAGTPALQKGKILSPADLGLLASLGIGEIPVQRRLRVAFFSTGDELRSIGET 221

Query: 208 LKPGGIYNSNRFLLRGLLQQLGCQVSDYGIVPDSLEATRQTLREAAREHDLIITSGGVSV 267
           L  G +Y+SNR+ L G+L +LGC V D G++ D  +      R A    D IITSGGVSV
Sbjct: 222 LDEGCVYDSNRYTLYGMLTRLGCDVVDMGVIKDDPDVLEAAFRTACENADAIITSGGVSV 281

Query: 268 GEEDHVKPAVQAEGRIKLWQIAMKPGKPLAFGQVRRGQGVGEGGSEAFFLGLPGNPVASF 327
           GE D+ K  +   G +  W+I M+PG+P+AFG+      +   G EA+  GLPGNPVA  
Sbjct: 282 GEADYTKQMMAQLGDVGFWKIGMRPGRPMAFGK------IASNGKEAYLFGLPGNPVAVM 335

Query: 328 VTFLLFVRPFLLRLQGLPREAVLP--QPVAMRADFDWPRADRRQEFLR--VRRNAQG--G 381
           VTF    R  LL + G    A  P  + V+  A    P    R E+ R  + RN++G   
Sbjct: 336 VTFYFLARQALLHMMGASAVAAPPLLRVVSQAAIRKRP---GRTEYQRGILSRNSEGIQE 392

Query: 382 LDLFPSQGSAVLTSTAWADGLIDNPPGQT-IAAGDMVQFLAFDHLL 426
           + +  SQGS VL S + A+ ++     +  + AG++V  + FD L+
Sbjct: 393 VRITGSQGSGVLRSMSEANCMVVLEHDRAEVKAGELVDVILFDGLI 438


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 774,458
Number of extensions: 29615
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 343
Effective length of database: 723,567
Effective search space: 248183481
Effective search space used: 248183481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)