BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1948.p
         (486 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095334|ref|YP_001100409.1| threonine synthase [Herminiimon...   843   0.0  

>gi|134095334|ref|YP_001100409.1| threonine synthase [Herminiimonas
           arsenicoxydans]
          Length = 486

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/486 (81%), Positives = 439/486 (90%)

Query: 1   MHYVSTRGHAATPSFSDILLGGLAPDGGLYLPAQYPQVSGAELDQWRKLSYADLAFEVLK 60
           M Y+STRG +A  SFS ILLGGLAPDGGLYLPA+YPQV+GAELD WR LSY DLAFEVLK
Sbjct: 1   MQYISTRGASAPQSFSHILLGGLAPDGGLYLPAEYPQVTGAELDVWRTLSYPDLAFEVLK 60

Query: 61  KFATDIPDADLKALAHKTYTADVYRNTRAGEDASQITPLRTLQEQDGKKLVLQSLSNGPT 120
           KFATDIP+ADL AL HKTYTADVYRN R GE+A++ITPLR ++E+DG KL+LQ+LSNGPT
Sbjct: 61  KFATDIPEADLHALVHKTYTADVYRNVRHGEEAARITPLRLVEEKDGSKLMLQALSNGPT 120

Query: 121 LAFKDMAMQLLGNLFEYALAKKGAELNIVGATSGDTGSAAEYAMRGKQGIRVFMLSPHKK 180
           LAFKDMAMQLLGNLFEY LAK+ AELNI GATSGDTGSAAEYAMRGK+GIRVFMLSPHKK
Sbjct: 121 LAFKDMAMQLLGNLFEYTLAKQHAELNIFGATSGDTGSAAEYAMRGKKGIRVFMLSPHKK 180

Query: 181 MSAFQTAQMFSLQDPNIFNLAVEGVFDDCQDIVKAISNDLEYKAAKKIGTVNSINWARVV 240
           MSAFQTAQMFSLQDPNIFN+AV+GVFDDCQD+VKA+SND  +K  +KIGTVNSINWARVV
Sbjct: 181 MSAFQTAQMFSLQDPNIFNIAVDGVFDDCQDMVKAVSNDHAFKQQQKIGTVNSINWARVV 240

Query: 241 AQVVYYFRGYLAATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNENDVLD 300
           AQV+YYFRGYL+ATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPI +LV ATNENDVLD
Sbjct: 241 AQVIYYFRGYLSATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIHQLVAATNENDVLD 300

Query: 301 EFFRTGIYRVRKSAETYHTSSPSMDISKASNFERFIYDLLGRDSTRVKALFHKVETEGGF 360
           EFFRTG+YRVRKSAETYHT+SPSMDISKASNFERF++DLLGRD  RV+ALF KVET GGF
Sbjct: 301 EFFRTGVYRVRKSAETYHTTSPSMDISKASNFERFVFDLLGRDGARVRALFQKVETHGGF 360

Query: 361 DLSGQAGSDGNEFASVIQYGFASGKSTHADRLETIRFAEKTYGITVDTHTADGIKVAREH 420
           DLSG+ GSDG+EF ++ Q+GF SGKSTHADRL TIR     Y + +DTHTADG+KVAREH
Sbjct: 361 DLSGKPGSDGDEFKNIAQFGFVSGKSTHADRLATIRDLHAKYDLMIDTHTADGVKVAREH 420

Query: 421 LAPGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEALPQRFEVMPADAARVKAYV 480
           L PG+TMIVLETALPAKFNETIREALGRDA+RPAGFENIE LPQRFEVM  D  ++KA++
Sbjct: 421 LTPGITMIVLETALPAKFNETIREALGRDAERPAGFENIEDLPQRFEVMTKDIEKMKAFI 480

Query: 481 AEHTGL 486
             HTGL
Sbjct: 481 TAHTGL 486


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 902,687
Number of extensions: 36695
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 401
Effective length of database: 720,272
Effective search space: 288829072
Effective search space used: 288829072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)