BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1946.p
         (436 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095335|ref|YP_001100410.1| homoserine dehydrogenase [Hermi...   707   0.0  

>gi|134095335|ref|YP_001100410.1| homoserine dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 437

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/436 (80%), Positives = 391/436 (89%), Gaps = 1/436 (0%)

Query: 1   MKSIKVGLLGIGTVGSGTFNVLQRNQEEIARRAGRGIEITMVAARNTARATELT-QGKVK 59
           MKSIKVGLLG GTVG+GTFN+L+RNQEEI+RRAG  IEI MVA  + ARA EL    + +
Sbjct: 1   MKSIKVGLLGAGTVGAGTFNILKRNQEEISRRAGHKIEIVMVADLDLARAKELVGSAECE 60

Query: 60  VVNDGNLVVNDPEIDIVVELIGGYDTARDLVMKAIANGKHVVTANKALIATHGNEIFKAA 119
           VVNDGNLVVN P+I+IVVELIGGY  A+DLV+KAIANGKHVVTANKAL+A HG+EIFKAA
Sbjct: 61  VVNDGNLVVNHPDIEIVVELIGGYGIAKDLVLKAIANGKHVVTANKALLAVHGDEIFKAA 120

Query: 120 REKGVIVAFEAAVAGGIPIIKALREGLTANRIQWVAGIINGTTNFILSEMRDKGLDFDVV 179
           ++KGV+VA+EAAVAGGIPIIKALREGLTANRI+W+AGIINGTTNFILSEMRDKGLDFD V
Sbjct: 121 QDKGVMVAYEAAVAGGIPIIKALREGLTANRIEWIAGIINGTTNFILSEMRDKGLDFDTV 180

Query: 180 LKEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQFDKAYVEGITKLQASDITYA 239
           LKEAQRLGYAEADPTFDIEGVDAAHK T+MASIAFGIPVQFDKA++EGITKL+A DI YA
Sbjct: 181 LKEAQRLGYAEADPTFDIEGVDAAHKATLMASIAFGIPVQFDKAHIEGITKLEAIDIRYA 240

Query: 240 EQLGYRIKLLGITRQTAKGIELRVHPTLIPASRLIANVEGAMNAVVVRGDAVGEALYYGK 299
           EQLGYRIKLLGI ++T +GIELRVHPTLIPA RLIANVEGAMNAVVV+GDAVG  LYYGK
Sbjct: 241 EQLGYRIKLLGIAKRTPQGIELRVHPTLIPAKRLIANVEGAMNAVVVQGDAVGATLYYGK 300

Query: 300 GAGSEPTASAVIADLVDITRLATADPEHHVPSLAFQLNAMADTPVLPMSEVVTSYYLRIR 359
           GAG+EPT SAVIADLVDI RLA ADP H VP LAFQ NAM+  P+LP+SEV TSYYLR+ 
Sbjct: 301 GAGAEPTGSAVIADLVDIARLADADPAHRVPHLAFQPNAMSALPILPISEVTTSYYLRLH 360

Query: 360 VADQAGVLADVTRILADSTISIDAMLQKEPAQGEQQTDIIMLTHQTQEKNIEAAIAKIEA 419
           V+D+ GVLA+VT ILA+STIS+DAMLQKEP  GE QTDII+LTHQTQEKN+EAAI+KIEA
Sbjct: 361 VSDKLGVLANVTSILAESTISVDAMLQKEPELGESQTDIIILTHQTQEKNVEAAISKIEA 420

Query: 420 LSTVVGQVTKIRLEEL 435
           L TV G+VTKIRLE L
Sbjct: 421 LPTVHGKVTKIRLEHL 436


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 780,658
Number of extensions: 32477
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 352
Effective length of database: 723,567
Effective search space: 254695584
Effective search space used: 254695584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)