BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1943.p
         (575 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095289|ref|YP_001100364.1| putative sugar transferase [Her...    97   3e-21

>gi|134095289|ref|YP_001100364.1| putative sugar transferase
           [Herminiimonas arsenicoxydans]
          Length = 492

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 157/336 (46%), Gaps = 31/336 (9%)

Query: 31  LVPTDEGRYAEMAREMVATQDWITTRLN-GIKYFEKPPLQTWMNAITFELFGLGEWQARL 89
           L  T E RY E+AR  V+   W+   ++    +F KPPL TW++A++  LFG+ E+ ARL
Sbjct: 55  LADTTEARYGEIARLTVSNGFWLMPHIDPHTPFFAKPPLSTWLSAVSMMLFGVNEFAARL 114

Query: 90  WTGLCGLLGIGLAAYTGSRVFNGRVGFYAALVLASS-FFWAGMGHINTLDMGLSGMMTIA 148
              L  L  + LA    + +   R  +  A VLASS  F+   G + T  + L  +++ A
Sbjct: 115 PALLASLAALWLAWAFAAEL-QIRQRWLVAPVLASSPLFFLCAGAVMTDAVQLM-LISAA 172

Query: 149 LCALLMAQRDGVSREGQRNWMLLCWAGMALAVLSKGLIGIVLPGAVLVLYTIFA-RDWAI 207
           L     A +    R+  R W L  W+ + L  L KGL    L G  L+ Y +   R   I
Sbjct: 173 LYFAWRALKATADRQAGRRWRLAFWSMVGLGALCKGLATWALIGLPLLAYVLIERRPLQI 232

Query: 208 WKRLHLVKGLLLFFAICTPWFVAVSLRNPEFPQFFFIHEHFQRFTTK--------IHSRT 259
           +K +    G+++ F I  PW++A    NP F  +F + EHF RF           I  R 
Sbjct: 233 FKDIFDWAGVVIAFGIFMPWYIAAEYYNPGFINYFIVGEHFSRFLVPGWKGDRYGIAQRQ 292

Query: 260 ---GPWYYFIPILVLGIIPWLGVFFQSLWKGTREQRDTAGYNSLNGGRFQP-KRLLLVWA 315
                W ++    V+GI+PW+G+F   +++   + R             QP +R L    
Sbjct: 293 PLGAIWVFW----VIGILPWIGIFATEMFRIFFKHRK----------ELQPVERFLWCAT 338

Query: 316 VFIFVFFSISDSKLPSYILPIFPALALLIACYLEEA 351
           +   +FF+ S + + +Y L      A+L A +L+ A
Sbjct: 339 LAPLLFFTFSSNIIWTYGLTAALPFAVLAARWLDNA 374


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,031,527
Number of extensions: 40696
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 488
Effective length of database: 713,682
Effective search space: 348276816
Effective search space used: 348276816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)