BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1941.p
         (373 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094352|ref|YP_001099427.1| putative polysaccharide biosynt...   216   1e-57

>gi|134094352|ref|YP_001099427.1| putative polysaccharide
           biosynthesis protein [Herminiimonas arsenicoxydans]
          Length = 412

 Score =  216 bits (551), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 202/389 (51%), Gaps = 26/389 (6%)

Query: 6   LPFAKPTIDEATITAVGEVLRSGWITSGPKVQAFEKALSDYLGGRIVRTFNSGTCTMEIA 65
           +P+ +  I EA I AV  VLRS ++T GP V AFEKA+++Y G R     NS T  + IA
Sbjct: 24  IPYGRQDISEADIQAVATVLRSDFLTQGPVVPAFEKAVAEYCGARHAIAVNSATSALHIA 83

Query: 66  LRIAGIGPGDEVITTPISWVATANVILETGATPVFADIDPVTRNIDLDQLE------AAI 119
               G+GPGD V T+PI++VA+AN     GA   F DIDP T N+ +  LE       A+
Sbjct: 84  CLALGVGPGDCVWTSPITFVASANCARYCGADVDFVDIDPRTYNMSVTHLEEKLLKAEAV 143

Query: 120 TPHTKAVIPVYLSGLPVDMDRLYAIAAKHQLRVVEDAAQALGSTWNGKRIGA--FGDFVS 177
               K VIPV+L G P +M+ ++A++ K+  R++EDA+ A+G  + GK IG   + D   
Sbjct: 144 GRLPKVVIPVHLCGQPCEMEAIHALSLKYGFRIIEDASHAIGGRYKGKAIGNCRYSDITV 203

Query: 178 FSLQANKNITSSEGGFLVLNNAEEARLAEKYRLQGVTR------SGFDG---LEVDLLGG 228
           FS    K IT+ EGG  + N+ E      + R  G+TR         DG    +   LG 
Sbjct: 204 FSFHPVKIITTGEGGMALTNDPELYNHMARLRSHGITRDPAEMTQAPDGPWYYQQIELGF 263

Query: 229 KFNMTDVAAAIGLGQFAHVDAVTAHRKELARHYFACFGHDFEANYGAQLPVADFEN-SNW 287
            + MTD+ AA+GL Q   +D   A R ELA++Y     ++        +P    ++ S  
Sbjct: 264 NYRMTDIQAALGLSQMQRLDEFVATRHELAKNY-----NELLKKCPVTIPWQHGDSYSGL 318

Query: 288 HMFQLVLPERITRAA---FMEKMVEKQIGIGYHYPAIHLLKLYRERGFKEGMFPVAERVG 344
           H++ + L    T A+     E++    IG+  HY  ++    Y  +GF    FP AER  
Sbjct: 319 HLYVVRLKLEATNASHHEIFERLRVAGIGVNLHYIPVYRQPYYARQGFNPSDFPEAERYY 378

Query: 345 QRIVSLPMFNAMRKEDVERSVETVKSVLG 373
              +SLPMF A+ KE  +  V ++ + +G
Sbjct: 379 AEAISLPMFPALTKEQQKEVVHSLTTPIG 407


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 744,848
Number of extensions: 32120
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 290
Effective length of database: 726,862
Effective search space: 210789980
Effective search space used: 210789980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)