BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1940.p (318 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094817|ref|YP_001099892.1| putative CPS-53 (KpLE1) prophag... 182 2e-47 gi|134093791|ref|YP_001098866.1| putative glucosyl transferase [... 161 4e-41 gi|134095764|ref|YP_001100839.1| putative bactoprenol glycosyl t... 154 6e-39 >gi|134094817|ref|YP_001099892.1| putative CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase [Herminiimonas arsenicoxydans] Length = 338 Score = 182 bits (462), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 166/305 (54%), Gaps = 8/305 (2%) Query: 5 LSVVIPVYNEESGLSKLFERLYPALDALGYSYEVIFVNDGSRDRSAGILAEQYRLRPDVT 64 L+VV+PV+NEES L ERL AL AL + +EVI+V+DGS DR+ IL +Q R Sbjct: 20 LTVVVPVFNEESVLPIFHERLEKALSALNHEWEVIYVDDGSTDRTHFIL-QQLRANSPKV 78 Query: 65 RVVLFNGNYGQHMAIMAGFEATRGDVVVTLDADLQNPPEEIGNLVAKMREGYDYVGSIRR 124 V F N+G+ A+ AG RGD VV +DADLQ+PPE I +V EG D V R Sbjct: 79 GVARFTRNFGKEEAMSAGLRLARGDAVVIIDADLQDPPELIPVMVEAWLEGVDIVNMRRS 138 Query: 125 KRQDSAW-RTYASKAMNRLREKITRIKMTDQGNMLRAYGRNVIDLVNKCREVNTFVPALA 183 R +W + + A R+ +++ + + + R R ID +N E N F+ L Sbjct: 139 HRSGESWFKKATAHAFYRVINRLSEVPVPEDVGDFRLLSRRAIDALNLLEERNRFMKGLF 198 Query: 184 YTFSRNPTEIVVEHEERSAGESKYSFYSLIRLNFDLVTGFSLVPLQFFSLLGI---GLSF 240 + + R+AG SK+ ++ L + +TGFS+ PL+ + +G+ G++F Sbjct: 199 AWIGFPQVTLNYSRDARAAGHSKWRYWRLWNFALEGITGFSVAPLKIATYVGLACAGITF 258 Query: 241 ASAALFILIVLRRLLIGAEVGGVFTLFAISFFLMGVILFSIGLLGEYIGRIYMQVRSRPR 300 AA F++ + L IG V G TL L G+ L +IG++GEY+GR++++ + RP Sbjct: 259 IYAAYFLI---KTLFIGESVKGFPTLIVTVMILGGLQLMAIGIIGEYLGRLFIESKRRPL 315 Query: 301 YVVQA 305 Y+++ Sbjct: 316 YLLEG 320 >gi|134093791|ref|YP_001098866.1| putative glucosyl transferase [Herminiimonas arsenicoxydans] Length = 337 Score = 161 bits (408), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 166/302 (54%), Gaps = 4/302 (1%) Query: 5 LSVVIPVYNEESGLSKLFERLYPALDALGYSYEVIFVNDGSRDRSAGILAEQYRLRPDVT 64 L+V++PV+NEES L +RL AL + ++EVI+++DGS D S IL L +V Sbjct: 20 LTVIVPVFNEESVLPIFHDRLERALANINETWEVIYIDDGSNDNSYAILQNLKVLSTNVG 79 Query: 65 RVVLFNGNYGQHMAIMAGFEATRGDVVVTLDADLQNPPEEIGNLVAKMREGYDYVGSIRR 124 + F N+G+ A+ AG G+ V +D+DLQ+PPE I +++ +G D V RR Sbjct: 80 -IARFARNFGKEAAMSAGLNLAAGEAAVVIDSDLQDPPELIPSMLDAWHQGSDIVNMRRR 138 Query: 125 KRQDSAW-RTYASKAMNRLREKITRIKMTDQGNMLRAYGRNVIDLVNKCREVNTFVPAL- 182 +R+ +W + + R+ +++ + + + R R I+ +N E N F+ L Sbjct: 139 QRKGESWLKKITAHLFYRIINRLSEVPVPEDVGDFRLLSRRAINALNLLEERNRFMKGLF 198 Query: 183 AYTFSRNPTEIVVEHEERSAGESKYSFYSLIRLNFDLVTGFSLVPLQFFSLLGIGLSFAS 242 A+ +N T + + E R+AGE+K+ ++ L + +TGF++ PL+ + LG S + Sbjct: 199 AWIGYKNVT-LDYDREARAAGETKWRYWRLWNFALEGITGFTVAPLKIATYLGSICSGVT 257 Query: 243 AALFILIVLRRLLIGAEVGGVFTLFAISFFLMGVILFSIGLLGEYIGRIYMQVRSRPRYV 302 + + + L++G V G TL L G+ L +IG++GEY+GR++++ + RP Y+ Sbjct: 258 IIYAVYFLSKTLMVGEPVKGFPTLIVTVLILGGLQLMAIGVIGEYLGRLFIESKRRPLYL 317 Query: 303 VQ 304 + Sbjct: 318 LD 319 >gi|134095764|ref|YP_001100839.1| putative bactoprenol glycosyl transferase [Herminiimonas arsenicoxydans] Length = 334 Score = 154 bits (389), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 102/314 (32%), Positives = 157/314 (50%), Gaps = 5/314 (1%) Query: 5 LSVVIPVYNEESGLSKLFERLYPALDALGYSYEVIFVNDGSRDRSAGILAEQYRLRPDVT 64 +S VIP YNE + L+ L L YE+I VNDGS+D + ++A L+ Sbjct: 17 ISCVIPAYNEAAHLAAFLRDLRAILATFAARYEIIVVNDGSKDNTDEVMAPL--LKEAGL 74 Query: 65 RVVLFNGNYGQHMAIMAGFEATRGDVVVTLDADLQNPPEEIGNLVAKMREGYDYV-GSIR 123 R + F+ N+G+ A+ AG +A +GD V+ LD D Q+P E + +V + G D V G I Sbjct: 75 RYISFSRNFGKEAALSAGIDAAQGDAVILLDGDYQHPLELLPEMVRLWQGGIDMVYGVIS 134 Query: 124 RKRQDSAWRTYASKAMNRLREKITRIKMTDQGNMLRAYGRNVIDLVNKCREVNTFVPALA 183 + +S + + + L E I + R R V+ + + E N F+ L Sbjct: 135 DRSNESRLKRWGTGMFYHLMESGAPITIPRNAGDFRLMDRQVVHALRQLPERNRFMKGLY 194 Query: 184 YTFSRNPTEIVVEHEERSAGESKYSFYSLIRLNFDLVTGFSLVPLQFFSLLGIGLSFASA 243 + + ER+ G S +S+ SL RL VT F+ +PL+ +S +G+ +S + Sbjct: 195 AWVGFSSIALPFVPNERATGVSSFSYRSLSRLALAGVTAFTTLPLRIWSGIGVVISIIAI 254 Query: 244 ALFILIVLRRLLIGAEVGGVFTLFAISFFLMGVILFSIGLLGEYIGRIYMQVRSRPRYVV 303 I +L G +V G TL A F G+ L SIG+LGEY+GR+Y +V+ RP YVV Sbjct: 255 LYAFWIAGEAILFGNDVPGWSTLAAGLMFFSGIQLISIGVLGEYMGRVYEEVKKRPLYVV 314 Query: 304 QAILEQS--TSEDK 315 ++ T+ DK Sbjct: 315 AHDIDNGPLTTPDK 328 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 555,872 Number of extensions: 21680 Number of successful extensions: 89 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 3 Length of query: 318 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 236 Effective length of database: 730,157 Effective search space: 172317052 Effective search space used: 172317052 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)