BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1939.p
         (305 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093409|ref|YP_001098484.1| methionyl-tRNA formyltransferas...    77   1e-15
gi|134095649|ref|YP_001100724.1| phosphoribosylglycinamide formy...    64   8e-12
gi|134094124|ref|YP_001099199.1| putative Formyl transferase, N-...    54   9e-09

>gi|134093409|ref|YP_001098484.1| methionyl-tRNA formyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 317

 Score = 76.6 bits (187), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 12/221 (5%)

Query: 23  GVQVSLVVTHEDSAT---ENIWFGSVAGVCREHGIPCITPTDPK--------SQQLLAQV 71
           G ++ LV+T  D        +   +V      H IP   P   +        +Q+    +
Sbjct: 23  GFEIPLVLTQPDRPAGRGMQLQASAVKQFALAHKIPVAQPISLRLDGKYPDVAQEAHDLL 82

Query: 72  QAMQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWAVLRGETETGAT 131
           +A   D +    Y  +LP  VL     G  N+H SLLP++RG  PI+ A+  G+ +TG T
Sbjct: 83  RATPHDVMVVAAYGLILPQSVLDIPPLGCLNIHASLLPRWRGAAPIHRAIEVGDEKTGIT 142

Query: 132 LHEMTAKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWKVLPAMLAGNTPKLPND 191
           + +M    D G ++   ++PI  DDT   +  K+       + + L  +  G     P  
Sbjct: 143 IMQMELGLDTGPMLLMESLPIAADDTTASLHDKLARLGGEMIVEALLKLEKGELTATPQP 202

Query: 192 LTQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAF 232
               +Y +    E+  +D R++A E+   +RA   P+PGA 
Sbjct: 203 EAGANYAAKIAKEEATLDLRQSAQELARKIRAFN-PFPGAM 242


>gi|134095649|ref|YP_001100724.1| phosphoribosylglycinamide
           formyltransferase [Herminiimonas arsenicoxydans]
          Length = 209

 Score = 63.9 bits (154), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 51  EHGIPCIT-------PTDPKSQQLLAQVQAMQPDFIFSFYYRHMLPVEVLAAAKRGAYNM 103
           EHGIP I          +     L +++    PD +    +  +L    +A       N+
Sbjct: 49  EHGIPAIVVPHKDYATREAFDAALQSRIDEFSPDLVVLAGFMRVLTSRFVAHYAGRMLNI 108

Query: 104 HGSLLPKYRGRVPINWAVLRGETETGATLHEMTAKPDAGAIVAQTAVPILPDDTAHEVFG 163
           H SLLP + G      A+  G T  GAT+H +TA  D G IVAQ  VP+LPDDT   +  
Sbjct: 109 HPSLLPSFVGLATHRQALAAGVTIHGATVHFVTADLDHGPIVAQATVPVLPDDTETTLAA 168

Query: 164 KVVVAAEMTLWKVLPAMLAGN 184
           +V+    +   +V+ A + G 
Sbjct: 169 RVLEQEHIIYPRVIRAFVEGR 189


>gi|134094124|ref|YP_001099199.1| putative Formyl transferase,
           N-terminal:amino acid-binding ACT [Herminiimonas
           arsenicoxydans]
          Length = 387

 Score = 53.9 bits (128), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 45  VAGVCREHGIPCITPTDPKSQQLLAQVQAMQPDFIFSFYYRHMLPVEVLAAAKRGAYNMH 104
           +A   R  G+P     +P+   +  +  A   D I + +    +  E LA A+ G    H
Sbjct: 39  LAQAARAAGVPLHILENPRF--VPGEAIAEGTDIILAAHTHARVSDEALARARLGGIGYH 96

Query: 105 GSLLPKYRGRVPINWAVLRGETETGATLHEMTAKPDAGAIVAQTAVPILPDDTAHEVFGK 164
            SLLP++RG   + W +L G+   G +++ +    DAGA+ AQ    +   +TA E++ +
Sbjct: 97  PSLLPRHRGIAAVEWTILEGDPIAGGSIYHLADGWDAGAVAAQDWCFVEKGETARELWER 156

Query: 165 VV 166
            +
Sbjct: 157 AL 158


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 635,383
Number of extensions: 27341
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 224
Effective length of database: 733,452
Effective search space: 164293248
Effective search space used: 164293248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)