BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1936.p
         (147 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095338|ref|YP_001100413.1| bacterioferritin comigratory pr...   256   2e-70
gi|134096292|ref|YP_001101367.1| putative peroxiredoxin [Hermini...    54   3e-09

>gi|134095338|ref|YP_001100413.1| bacterioferritin comigratory
           protein (blue copper protein like) [Herminiimonas
           arsenicoxydans]
          Length = 164

 Score =  256 bits (655), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 133/146 (91%)

Query: 1   VPEFSAAMTSGKTFKLADYRGKNLVLYFYPKDNTPGCTTEGIQFRDLHPQFQAANTEIFG 60
           VP+FSAAMT  +TF+L+DY+GK +VLYFYPKDNTPGCTTEGIQFR+++ QFQAAN EI G
Sbjct: 18  VPDFSAAMTGNQTFQLSDYKGKRIVLYFYPKDNTPGCTTEGIQFREMYSQFQAANAEIVG 77

Query: 61  ISRDSLKSHENFKGKLEMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVIDAA 120
           +SRDS++SHE FK KL +PFELISDPDETLCTMFDVMKMKNMYGK+VRG+ERSTF+ID +
Sbjct: 78  VSRDSIRSHEGFKEKLALPFELISDPDETLCTMFDVMKMKNMYGKKVRGIERSTFIIDES 137

Query: 121 GKVVKEWRGVKVPAHVDEVLSFIKTL 146
           GK+VKEWRGVKVP H+DEVL F+K L
Sbjct: 138 GKLVKEWRGVKVPGHIDEVLEFVKAL 163


>gi|134096292|ref|YP_001101367.1| putative peroxiredoxin
           [Herminiimonas arsenicoxydans]
          Length = 213

 Score = 54.3 bits (129), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 2   PEFSAAMTSGKTFKLADYRGKN-LVLYFYPKDNTPGCTTEGIQFRDLHPQFQAANTEIFG 60
           P+F    + GK  K  ++ G + +VL+ +P D TP CTTE      L PQF   N +   
Sbjct: 11  PDFEQDSSIGK-IKFHEWAGDSWVVLFSHPADFTPVCTTELGLTAKLKPQFDKRNVKAIA 69

Query: 61  ISRDSLKSHENFKGKLE------MPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERST 114
           +S D    H  +   +E      + F +++D D+++ T++D++         VR V    
Sbjct: 70  LSVDPADQHLEWIKDIEATQKTVVGFPIVADADKSVSTLYDMIHPNQSATATVRSV---- 125

Query: 115 FVIDAAGKV-VKEWRGVKVPAHVDEVLSFIKTL 146
           F+ID   K+ +     + V  + DE+L  I  L
Sbjct: 126 FIIDPQKKIRLTLTYPMSVGRNFDEILRAIDAL 158


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 271,595
Number of extensions: 9774
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 73
Effective length of database: 756,517
Effective search space: 55225741
Effective search space used: 55225741
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)