BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1935.p
         (567 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095340|ref|YP_001100415.1| hypothetical protein HEAR2155 [...   917   0.0  
gi|134093657|ref|YP_001098732.1| phosphate starvation-inducible ...   110   2e-25

>gi|134095340|ref|YP_001100415.1| hypothetical protein HEAR2155
           [Herminiimonas arsenicoxydans]
          Length = 554

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/568 (80%), Positives = 501/568 (88%), Gaps = 15/568 (2%)

Query: 1   MPLPKMPSKPASMLSPEDYPKADRNKPVKPNITLVETSAPVVAPQEVAVAVVDVSDTKVA 60
           MPLPK+P+KPA++LSP+DYPKAD++K VK  +TL+E   P       A A   V      
Sbjct: 1   MPLPKLPTKPAALLSPQDYPKADKDKIVKA-LTLIE---PTARQSHTAPAPAPV------ 50

Query: 61  APRARITGKTAAVTEKPK-TAPKSVETRSKSTTSRVADKLGKSKLFVLDTNVLMHDPTSL 119
             RA+I  K  A  EKP+  + ++V    KS   R  DK G  KLFVLDTNVLMHDPTSL
Sbjct: 51  --RAKIIDKAPA--EKPRAVSAQTVALAPKSGARRPLDKSGIKKLFVLDTNVLMHDPTSL 106

Query: 120 FRFEEHDIYLPMVTLEELDNHKKGMSEVARNARQISRSLDALVSDIAEDAIDLGIPLSKL 179
           FRFEEHD+YLPM+TLEELD+HKKGMSEVAR+ARQ+SRSLDALVS + E+AID GIPLSKL
Sbjct: 107 FRFEEHDVYLPMMTLEELDDHKKGMSEVARSARQVSRSLDALVSGVEENAIDEGIPLSKL 166

Query: 180 GNKDAKGRLYFQTKLQNAALPEGLPEGKADNQILGVVRALDQQYPERPVVLVSKDINMRL 239
           GNKDAKGRL+FQTKLQN  LPEGLP GKADNQILGVVRAL+ QYP RP+VLVSKDINMR+
Sbjct: 167 GNKDAKGRLFFQTKLQNMTLPEGLPMGKADNQILGVVRALEAQYPGRPIVLVSKDINMRI 226

Query: 240 KARAIGLPAEDYFNDHVLEDTDLLYSGIQQLPDDFWTKHGKGMESWQESRHGSSYTYYRV 299
           KARA+GLPAE+Y NDHVLEDTDLLYSGI QLPDDFW KH KGMESWQE++HG+ YT+YR+
Sbjct: 227 KARAMGLPAEEYLNDHVLEDTDLLYSGIMQLPDDFWIKHAKGMESWQENKHGTGYTFYRL 286

Query: 300 TGPYVPSLLVNQFVFIEPKNGEPAFYGQVSQINGKTAVLQTLRDFGHAKNSVWGITARNR 359
           +GP VP++LVNQFV++EP+NGE +FYGQV QINGKTAVLQTLRD+ H KNSVWG+TARNR
Sbjct: 287 SGPVVPTMLVNQFVYMEPRNGEASFYGQVRQINGKTAVLQTLRDYAHMKNSVWGVTARNR 346

Query: 360 EQNFALNLLMNPECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIVTRVTVPVGED 419
           EQNFALNLLM+PECDFVTLLGQAGTGKTLLALA+GLAQVLETKLY+EIIVTRVTVPVGED
Sbjct: 347 EQNFALNLLMDPECDFVTLLGQAGTGKTLLALAAGLAQVLETKLYSEIIVTRVTVPVGED 406

Query: 420 IGFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSRIKIKSLNFMRGR 479
           IGFLPGTEEEKM PWMGAFDDNLEVLNKSD DAGEWGRAATQDLIRSRIKIKSLNFMRGR
Sbjct: 407 IGFLPGTEEEKMSPWMGAFDDNLEVLNKSDNDAGEWGRAATQDLIRSRIKIKSLNFMRGR 466

Query: 480 TFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDR 539
           TFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKI+CLGNIAQIDTPYLTEGSSGLTYVVDR
Sbjct: 467 TFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIICLGNIAQIDTPYLTEGSSGLTYVVDR 526

Query: 540 FKGWAHSGHVTLARGERSRLADHASDVL 567
           FKGW HSGHVTLARGERSRLADHAS+VL
Sbjct: 527 FKGWGHSGHVTLARGERSRLADHASEVL 554


>gi|134093657|ref|YP_001098732.1| phosphate starvation-inducible
           protein [Herminiimonas arsenicoxydans]
          Length = 330

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/250 (35%), Positives = 122/250 (48%), Gaps = 22/250 (8%)

Query: 296 YYRVTGPYVPSLLVNQFVFIEPKN--GEPAFYGQVSQ-INGKTA---VLQTLRDFGHAKN 349
           +YRV    VP L   Q   +E +    EP       +   GKTA   V++++ D    K 
Sbjct: 40  FYRVADKVVP-LEEVQLALVEQRASLAEPELIISAGKKTAGKTAGKKVVESVTDAPVLKT 98

Query: 350 SVWGITARNREQNFALNLLMNPECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIV 409
               +  R   Q   L  +M+ +  F   +G AGTGKT LA+A  +   LE      II+
Sbjct: 99  RRHDLRGRTPHQLQYLKAIMDHDITFG--VGPAGTGKTYLAVACAV-DALERDAVKRIIL 155

Query: 410 TRVTVPVGEDIGFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSR-I 468
           TR  V  GE +GFLPG   +K+ P++    D L  L          G   TQ +   + I
Sbjct: 156 TRPAVEAGERLGFLPGDLSQKIDPYLRPLYDALYDL---------LGFDRTQKMFEKQAI 206

Query: 469 KIKSLNFMRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTE 528
           +I  L +MRGRT  + F+I+DEAQN TP+QMK  +TR G G+K V  G+I QID      
Sbjct: 207 EIAPLAYMRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITGDITQIDLQ--QN 264

Query: 529 GSSGLTYVVD 538
             SGL   +D
Sbjct: 265 QKSGLIEAID 274


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,033,376
Number of extensions: 42429
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 567
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 480
Effective length of database: 713,682
Effective search space: 342567360
Effective search space used: 342567360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)