BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1930.p
         (94 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095345|ref|YP_001100420.1| 30S ribosomal protein S18 [Herm...   181   4e-48

>gi|134095345|ref|YP_001100420.1| 30S ribosomal protein S18
          [Herminiimonas arsenicoxydans]
          Length = 94

 Score =  181 bits (460), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/94 (94%), Positives = 91/94 (96%)

Query: 1  MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDKSKLK KR+QQNPLFKRKKFCRFTAA VEQVDYKDVDTLKDFVQENGKIMPA
Sbjct: 1  MAFGKKFDKSKLKEKRKQQNPLFKRKKFCRFTAAHVEQVDYKDVDTLKDFVQENGKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKA YQRQVDTAIKRAR+LALLPYTDLHNA
Sbjct: 61 RLTGTKAIYQRQVDTAIKRARFLALLPYTDLHNA 94


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 164,216
Number of extensions: 5425
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 94
Length of database: 1,000,347
Length adjustment: 63
Effective length of query: 31
Effective length of database: 792,762
Effective search space: 24575622
Effective search space used: 24575622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)