BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1923.p
         (689 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095068|ref|YP_001100143.1| putative flagellar hook-associa...   112   5e-26

>gi|134095068|ref|YP_001100143.1| putative flagellar hook-associated
           protein 2 (filament CAP protein) [Herminiimonas
           arsenicoxydans]
          Length = 662

 Score =  112 bits (281), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 130/234 (55%), Gaps = 20/234 (8%)

Query: 368 GGNIDLKQVMSAINNANAGVSASISNDGSN--DHLVLTPTGSSATAAVTLTGTGDYAGLT 425
           G N  L+ +  AIN A+ GV+ASI +DGS+    LVLT T + A +++ +T  GD A  +
Sbjct: 162 GSNNSLQGIRDAINKADLGVTASIVSDGSDTPHRLVLTSTETGANSSLKITVDGDAALSS 221

Query: 426 M-----SGMGQLLK---AQDAKLSIDGVSVTSPSNKVQNAISGVTLNLAKVTTSADNFTL 477
           +      G  QL +    +DA  +IDG+ + +PSN +   I G+ + LAK+  +    T+
Sbjct: 222 LLSQDPVGTQQLRENAAGKDALATIDGIEIKNPSNTLDKNIEGLNITLAKIGKT----TV 277

Query: 478 NISNDTSGITTAANSFVSAYNTLAKAIAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQ 537
           +++ DTS IT+A N+FV+AYN L   +   T+    T      T  PL  +++ +TI   
Sbjct: 278 SLTRDTSSITSAVNAFVTAYNELHGTLKYQTSYNAET-----KTGGPLVGDATARTIQLG 332

Query: 538 LRNTLFATVDGGNG-ISSLADIGIAFQKDGTLALDATKLSTATTNNFAGISNLF 590
           ++       +G  G + +L+ IGI+FQKDGTLALD  KL TA T     I  LF
Sbjct: 333 IQRMFSTQPEGLTGELKNLSQIGISFQKDGTLALDNAKLQTAVTKFPDDIGRLF 386



 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 55/82 (67%)

Query: 605 NGIVTRLQTLMTNILSDSGIIATKTNGLQASLKINQDRQTAVQTRLSNLKDNYTNQFNQL 664
            G  T LQ L+ N L  SG+IA +T+G+  ++K   +++TA+ TRL +++  Y  Q++ L
Sbjct: 577 RGYATNLQGLLGNYLGSSGMIAGRTDGINENIKQLNNQRTAINTRLIDIEARYRKQYSSL 636

Query: 665 NTTLASMQSTQSYLTQQLAGLA 686
           +  L++M +T +YLTQQLA L+
Sbjct: 637 DVLLSNMGATSNYLTQQLAALS 658


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.305    0.119    0.307 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,103,583
Number of extensions: 43998
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 3
Length of query: 689
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 601
Effective length of database: 710,387
Effective search space: 426942587
Effective search space used: 426942587
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 132 (55.5 bits)