BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1920.p
         (396 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095071|ref|YP_001100146.1| hypothetical protein HEAR1871 [...   212   2e-56

>gi|134095071|ref|YP_001100146.1| hypothetical protein HEAR1871
           [Herminiimonas arsenicoxydans]
          Length = 378

 Score =  212 bits (540), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/442 (34%), Positives = 215/442 (48%), Gaps = 117/442 (26%)

Query: 1   MLPRADIASAVQPVNPVEAATAVVSVADARQEAFSRLAQIALGQQMSGRILSNFNDGTFL 60
           MLPRADI +  +PV  +EA+    ++  A+QE   RL Q+ LG++   ++LS  +DG FL
Sbjct: 1   MLPRADI-TGTRPVVLIEASAPATALGQAKQETLDRLLQLTLGKEYQAQVLSRLSDGNFL 59

Query: 61  VRIANTAARMVLPNSAKVGDTLTLTLVSKDPRPTFSVNEGSIRSDEESASVALSSAGRAM 120
           V++ N  A M+LP   K GD L LTL++  PRPTF + +      E  A+ +LS+AGR +
Sbjct: 60  VKVDNAVASMLLPPGTKAGDKLDLTLLATQPRPTFMLGKA-----EAGATTSLSNAGRLI 114

Query: 121 QKDLKSLQFVTRDESGADQIAQNEDVAADAQAKGARQGQAGGPASTTTTLSNAGRLIDTL 180
              L              Q+AQ + +      K    G  G  A                
Sbjct: 115 GNML--------------QLAQQDGMPTAIVGKTPLVGMPGASA---------------- 144

Query: 181 LQASQHGDVSDHVNATAPLLPKANLPPEQVASALKDAIAYSGVFYESHVSAWAAGQRSAE 240
                                      +Q+A AL++AI +SG+FYESHV+ WA G R A 
Sbjct: 145 ---------------------------QQIADALQNAITFSGLFYESHVAQWALGTRPAS 177

Query: 241 DLMKEP-----------QAQVASRN-----------------GGDINLLN------DNNP 266
           DL++EP           Q Q AS N                 GG+  L +         P
Sbjct: 178 DLLREPAAKRSNLPLTGQPQAASENSAASDFGRLMTNVREWVGGERALADLLRSAQTGKP 237

Query: 267 AQNQLG---------------QLINLQLNALEQQRVVWHGEVWPDQKMEWEINQEHDQDP 311
            Q  +                +LINLQL+ LEQ+R++W GE++P Q +EWEI+   D  P
Sbjct: 238 EQESIAPLAGKQQDIPVSEGLKLINLQLDTLEQRRIMWQGELFPGQPLEWEIS---DDTP 294

Query: 312 SQNSQHNGEESAPTWHSVVRFNFAHLGSVSASIRLIGQQIHVQVKADNEAATAALRGNSG 371
            + ++ +  E A  W+S VRF+   LGSVSA+IRL G+ + VQV   +E     LR +  
Sbjct: 295 EKTAEQSEPEQA--WNSSVRFSLPTLGSVSATIRLSGEHLQVQVHTADEETAVTLRSHGN 352

Query: 372 LFANAMAAAGTSLDSLIVKQAD 393
           L A+A+AAAG++LDSL+VKQAD
Sbjct: 353 LLADALAAAGSTLDSLLVKQAD 374


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.311    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 607,192
Number of extensions: 20422
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 312
Effective length of database: 723,567
Effective search space: 225752904
Effective search space used: 225752904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)