BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1919.p
         (114 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095072|ref|YP_001100147.1| putative part of export apparat...   119   3e-29

>gi|134095072|ref|YP_001100147.1| putative part of export
          apparatus for flagellar proteins (partial)
          [Herminiimonas arsenicoxydans]
          Length = 97

 Score =  119 bits (299), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 69/83 (83%)

Query: 7  PLQNAVALAYNASQAAPQVVAKGRGLVAEAIIARAREAGVYVHESKELVSLLMQVELDQQ 66
          P  +AVALAY +  +AP++VAKGRGL+AE II RA+E GV +HESKELV+LL+QVELD  
Sbjct: 9  PPPSAVALAYQSGDSAPRIVAKGRGLIAEQIIERAKEHGVAIHESKELVALLLQVELDDN 68

Query: 67 IPPALYRTVAELLAWLYRIENMQ 89
          IPPALYR VAELLAWLYR+E  Q
Sbjct: 69 IPPALYRAVAELLAWLYRVEAAQ 91


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 171,631
Number of extensions: 4364
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 44
Effective length of database: 769,697
Effective search space: 33866668
Effective search space used: 33866668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 122 (51.6 bits)